PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148122001
Common NameGSBRNA2T00148122001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 310aa    MW: 35102.7 Da    PI: 8.0542
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148122001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.6e-1449109155
                  AP2   1 sgykGV.rwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++GV ++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa+a++ a++k++g
  GSBRNA2T00148122001  49 SSHRGVtSRHRWTGRYEAHLWDkNSWNEtqtKKgRQVYLGAYDEEEAAARAYDLAALKYWG 109
                          579****9**************888877878557*************************98 PP
2AP2544.2e-17152203155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GSBRNA2T00148122001 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 203
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1050109IPR001471AP2/ERF domain
PROSITE profilePS5103220.25750117IPR001471AP2/ERF domain
SMARTSM003802.8E-2450123IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1550119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-1551118IPR001471AP2/ERF domain
CDDcd000189.39E-25152213No hitNo description
PfamPF008471.5E-12152203IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-18152213IPR016177DNA-binding domain
SMARTSM003803.4E-26153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-18153212IPR001471AP2/ERF domain
PROSITE profilePS5103218.874153211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAKLSQRNKK IIEDETIDKT ATASASPVVF KCKRKRKSPP QNAPPQRSSS HRGVTSRHRW  60
TGRYEAHLWD KNSWNETQTK KGRQVYLGAY DEEEAAARAY DLAALKYWGR DTLLNFPLST  120
YEEDVKEMEA HSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA ARAYDIAAIE YRGLNAVTNF DVSRYLDLPA TKKPNAAASP ESPNDQTSSD  240
DNNFTKTEEV TEPSTPPEAI QSRRSFPDDI QTYFECQDSG KSATEEDVIF GGFSSFISPG  300
LCNEFDYWS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148122001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587864.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
RefseqXP_013726930.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-139AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A3P6GX780.0A0A3P6GX78_BRAOL; Uncharacterized protein
STRINGBra035137.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-137AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]