PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148177001

Common Name

GSBRNA2T00148177001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 256aa MW: 28020.4 Da PI: 7.1912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148177001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00055	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00148177001 116 YECKTCNRTFPSFQALGGHRASH 138 99**********99999998887 PP
2	zf-C2H2	13.5	0.00021	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00148177001 160 HECSICGSEFTSGQALGGHMRRH 182 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.2E-13	115	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.15E-7	115	182	No hit	No description
PROSITE profile	PS50157	10.554	116	143	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	116	138	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	160	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	160	182	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.7E-11	160	183	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAATTI TSTSSSADGE RTASDEYNSV 60 VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS TKTDKNLHLK TSFYVYECKT 120 CNRTFPSFQA LGGHRASHKK PRASIDEKAK VPLTQLKSIH ECSICGSEFT SGQALGGHMR 180 RHRTVTNVVS SPVSTAEVSR NSTEEETENL SRSMEQRKYL PLDLNLPAPE DDLRESKFQR 240 IVFSATTPAL IDCHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24905	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148177001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103654.1	1e-165	PREDICTED: zinc finger protein ZAT5
Refseq	XP_013651797.1	1e-165	zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-119	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	M4D662	1e-163	M4D662_BRARP; Uncharacterized protein
STRING	Bra011970.1-P	1e-164	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-105	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]