PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148359001
Common NameGSBRNA2T00148359001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 571aa    MW: 64425.6 Da    PI: 5.3605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed+ll+ +v ++G g+W+t+ ++ g+ R++k+c++rw ++l
  GSBRNA2T00148359001 22 KGPWTSAEDQLLIGYVDKHGEGNWNTVQKHSGLSRCGKSCRLRWVNHL 69
                         79*******************************************996 PP
2Myb_DNA-binding43.47.6e-1475118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T  E+++ v++++ +G++ W++ a+ ++ gRt++++k++w++
  GSBRNA2T00148359001  75 KGSFTDKEEQRVVELHASMGNK-WARMAAQLP-GRTDNEIKNFWNT 118
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8881769IPR017930Myb domain
SuperFamilySSF466897.26E-2820116IPR009057Homeodomain-like
SMARTSM007171.6E-132171IPR001005SANT/Myb domain
PfamPF002494.6E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222376IPR009057Homeodomain-like
CDDcd001672.94E-102469No hitNo description
PROSITE profilePS5129423.54270124IPR017930Myb domain
SMARTSM007171.6E-1374122IPR001005SANT/Myb domain
PfamPF002491.7E-1275118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2477122IPR009057Homeodomain-like
CDDcd001677.85E-977120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MGKVGHDSGS GKDFAIEKTF HKGPWTSAED QLLIGYVDKH GEGNWNTVQK HSGLSRCGKS  60
CRLRWVNHLR PSLKKGSFTD KEEQRVVELH ASMGNKWARM AAQLPGRTDN EIKNFWNTRL  120
KKLQRLGLPI YPDEVREQAM NAAAQNGQNS DHSQESLEPD CLEIPEFDFK YLQLNNYQSV  180
LLRNVPMGNM MKHCSFQPNM YNLIGSPYMS PNRKRVREQE TDFLDTGDYA TNEQSAQLWN  240
QKQFHVVPES HLLGNATTYS SPPSEPEAEK LELPSFQCFD PPGDWETQHS NPMPAVESDR  300
TLVQSPLTDC PSSGLLESVV YGSSGEKQAT NSTDPDSPLL LQSSLFGHIE LTPAFENNTE  360
TDMFPFGPTS SSERGTSLES GDWIRQLLGE DRDYTNDNRY RARTTIIPTL AGHVHLSSNI  420
SGSANSQLHQ RFTVDTEGTR EWARYHWKYL DASFSDHLPD RQIDFPFTTS LEMSYFALPE  480
YHIDLISESS GVALLELSRS IRRFLRILQN PWQRGSETSG LAMLLVRACG AETFVPWTLL  540
ERAGASCLFM LELNFHSGSS IYSNETGEYD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28221227106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148359001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765470.0KR076547.1 Brassica napus MYB transcription factor 81-1 (MYB81-1.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635316.10.0PREDICTED: transcription factor MYB104-like isoform X1
TrEMBLA0A0D3BUK30.0A0A0D3BUK3_BRAOL; Uncharacterized protein
STRINGBo4g076940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-134myb domain protein 81
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]