PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148381001

Common Name

GSBRNA2T00148381001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 151aa MW: 16058.6 Da PI: 10.3559

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148381001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	41	3e-13	54	108	1	55
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lv++L++cAeav++++l la+al++++ la +++ +m ++a+yf+ La+r++r GSBRNA2T00148381001 54 LVHALMACAEAVQTSNLMLAEALVKQIGFLAGSQAGAMGKVATYFAGTLARRIYR 108 689**************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.668	28	150	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-10	54	108	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MCLKPCSSPD SMVTSPSPTT QIGGIIGTTI TTTTASESTR PVILVNSQDN GVRLVHALMA 60 CAEAVQTSNL MLAEALVKQI GFLAGSQAGA MGKVATYFAG TLARRIYRLL HPDSNRPFSL 120 RYFPDATTLA PTSSLLISRR SKPFRHSLFN *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. {ECO:0000269\|PubMed:15734906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148381001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598468.1	1e-47	PREDICTED: DELLA protein RGA1
Swissprot	Q5BN23	9e-45	RGA1_BRACM; DELLA protein RGA1
TrEMBL	A0A0D3BUI8	1e-105	A0A0D3BUI8_BRAOL; Uncharacterized protein
STRING	Bo4g076790.1	1e-106	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-37	GRAS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]