PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149029001
Common NameGSBRNA2T00149029001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 421aa    MW: 44578.6 Da    PI: 7.3162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149029001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-124065227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H+p
  GSBRNA2T00149029001 40 DEPDCVYYLRTGVCGYGSRCQFNHPP 65
                         6899********************97 PP
2zf-CCCH37.83.2e-1287111327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtG+Ck+G++Ck++H++
  GSBRNA2T00149029001  87 QPVCQHFMRTGECKFGASCKYHHPR 111
                          589********************96 PP
3zf-CCCH40.83.7e-13136160226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G++CkF+H+
  GSBRNA2T00149029001 136 GEKECPYYMRTGQCKFGSTCKFHHP 160
                          7899********************9 PP
4zf-CCCH36.96.3e-12281306126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++C +f++tG Ck+G +C+++H+
  GSBRNA2T00149029001 281 PGQPECTYFMKTGDCKFGTSCRYHHP 306
                          5789*********************9 PP
5zf-CCCH31.62.9e-10326352127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++t++C++fa+  +Ck G+ CkF H++
  GSBRNA2T00149029001 326 PGTAPCSHFAQHKICKLGPACKFDHSM 352
                          68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-53865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1923866IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-64266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-64464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86384112IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-785111IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-1088111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-589111IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854134162IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11136160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5140159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478280308IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6280307IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9282306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6284308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4286306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962325353IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5325352IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5326353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEPGEEGSRS DPGNETGIEA SMSRLGLGGG GNESYPERPD EPDCVYYLRT GVCGYGSRCQ  60
FNHPPNRPPV LGGLRAEAGE FPERMEQPVC QHFMRTGECK FGASCKYHHP RQGGGGGDSV  120
TSPISFNHMG FPLRPGEKEC PYYMRTGQCK FGSTCKFHHP VPPGDQVPSQ QQLSTGPAIY  180
PPLQSQPSQQ FGVVVPRPQL LPGSYVQSPY GTYSQMVLPP GMVSYSGWNP YQPSVSAIPS  240
PGTQPSMGPS SVYGTTPLSP SAPAYQSGPS SNKEHSFPQR PGQPECTYFM KTGDCKFGTS  300
CRYHHPLEAA SPKGVALSNI GLPLRPGTAP CSHFAQHKIC KLGPACKFDH SMTSSLNDQG  360
TELHSSSSIK PTTTTSGGGS ETTGAAGVSS SSSMTVGVSH SERTESKDGD SVSIEVKTSS  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149029001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131674.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X2
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A397ZUM50.0A0A397ZUM5_BRACM; Uncharacterized protein
STRINGBra006465.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]