PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00149186001

Common Name

GSBRNA2T00149186001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 264aa MW: 30089.9 Da PI: 10.1255

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00149186001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	4	27	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C ksF + L H+ + H GSBRNA2T00149186001 4 YKCKFCFKSFVNERALGGHMLSlH 27 9******************99888 PP
2	zf-C2H2	15.6	4.6e-05	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F++ L H +H GSBRNA2T00149186001 160 FTCETCGKVFKSYQALGGHRASH 182 89***********9999998887 PP
3	zf-C2H2	10.8	0.0016	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H r+H GSBRNA2T00149186001 205 HECPICLRVFASGQALGGHKRSH 227 79*****************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.0E-8	3	27	No hit	No description
Pfam	PF13894	7.5E-4	4	27	No hit	No description
PROSITE profile	PS50157	9.182	4	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	4	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.0E-8	155	182	No hit	No description
SMART	SM00355	0.02	160	182	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.0E-11	160	184	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.053	160	187	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	205	227	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.3E-12	205	227	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.058	205	227	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MESYKCKFCF KSFVNERALG GHMLSLHNFC IEEEARPSQL SDDSESDVSS SSSSSHEVER 60 KRNGLREEKH PTMDDDQRNV TNLTRKRSKR TRKLDSFASK KMKTSQLGYK TEPEPRHSSA 120 SDTTTEEDLA FCLMMLSRDK WKKKKKNNKT SSTTTTKGRF TCETCGKVFK SYQALGGHRA 180 SHKKNRVSNK IEYDSVVVVE EKRIHECPIC LRVFASGQAL GGHKRSHGLG NLSVNHHQVR 240 RTESVKQRML DLNFPAPTEE DKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00149186001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189319	6e-84	AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139311.1	1e-166	PREDICTED: zinc finger protein ZAT9-like, partial
Swissprot	Q9M202	1e-119	ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBL	A0A397ZIV2	1e-163	A0A397ZIV2_BRACM; Uncharacterized protein
STRING	Bo4g104940.1	1e-155	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-101	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]