PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149382001
Common NameGSBRNA2T00149382001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 278aa    MW: 31039 Da    PI: 6.667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149382001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-1012491148
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +l+d+++ +G+g+W+  ++  g+ R++k+c++rw +yl
  GSBRNA2T00149382001 12 KLIDYIRVHGPGNWRILPKNAGLQRCGKSCRLRWTNYL 49
                         79**********************************97 PP
2Myb_DNA-binding54.43e-175599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00149382001 55 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 99
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4851IPR001005SANT/Myb domain
PROSITE profilePS500907.445849IPR017877Myb-like domain
SuperFamilySSF466898.39E-241296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-171256IPR009057Homeodomain-like
CDDcd001672.58E-61249No hitNo description
PfamPF002493.5E-81249IPR001005SANT/Myb domain
PROSITE profilePS5129425.80450104IPR017930Myb domain
SMARTSM007172.7E-1654102IPR001005SANT/Myb domain
PfamPF002491.6E-155599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2757105IPR009057Homeodomain-like
CDDcd001671.73E-1257100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRLPCCDKN GKLIDYIRVH GPGNWRILPK NAGLQRCGKS CRLRWTNYLR PDIKRGRFSF  60
EEEETIIQLH SVMGNKWSAI AARLPGRTDN EIKNHWNTHI RKRLVRSGID PVTHSPRLDL  120
LDLSSLLAAI FNQPNFSSVA TNASSLLNPD VLRLASLLLP PQQPLQNPNA LYASNLDQNL  180
QTPNTSVSSQ DSQPQAECTT PAKDATSYFE PIMNARLEVG PSDVLPPLSE SFDLDSLMST  240
PNYSPQQNNI EAEANSSSLF DFRFPDNFTF DDFMGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23810413108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149382001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765480.0KR076548.1 Brassica napus MYB transcription factor 41 (MYB41.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673934.10.0transcription factor MYB41-like
SwissprotQ9M0J51e-139MYB41_ARATH; Transcription factor MYB41
TrEMBLM4EBX20.0M4EBX2_BRARP; Uncharacterized protein
STRINGBra026281.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-137myb domain protein 41
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]