PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00149473001

Common Name

GSBRNA2T00149473001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 428aa MW: 47022.3 Da PI: 9.7964

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00149473001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	193	215	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ Fs+ + + H t H GSBRNA2T00149473001 193 SCHKCGEKFSNLEAAEAHHLTkH 215 6*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	194	215	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.17E-24	217	426	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.9E-11	218	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MEGSRKRSEK KKKHQLEREN TNTQKNKKLP SVWFSLKKSL HCKSDPTDVH DPSSRSKETT 60 KRSTYRSGCS RSIANLKDVI HGSNRHLEKP TTCSSPRSIG SSEFLNPITH EVIISNSTSE 120 LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GGAAFKQSRR 180 DSAVVNGDDS SVSCHKCGEK FSNLEAAEAH HLTKHAVTEL VEGDSSRKIV EMICRTSWLK 240 TENQCGRIDR ILKVHNMQKT LARFEEYRDT VKNRASKLQK KHPRCIADGN ELLRFHGTTV 300 SCVLGVNGCT SLCSSEKCCV CRIIRNGFSV KREMNNGIGV FTASTSGRAF ESIAMDGGDG 360 TTERKALIVC RVIAGRVHRP VENVEEMGGL NGFDSLAGKV GLYTNVEELY LLNSRALLPC 420 FVVICKP*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MEGSRKRSEK KKKHQLEREN TNTQKNKKLP SVWFSLKKSL HCKSDPTDVH DPSSRSKETT  60
KRSTYRSGCS RSIANLKDVI HGSNRHLEKP TTCSSPRSIG SSEFLNPITH EVIISNSTSE  120
LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GGAAFKQSRR  180
DSAVVNGDDS SVSCHKCGEK FSNLEAAEAH HLTKHAVTEL VEGDSSRKIV EMICRTSWLK  240
TENQCGRIDR ILKVHNMQKT LARFEEYRDT VKNRASKLQK KHPRCIADGN ELLRFHGTTV  300
SCVLGVNGCT SLCSSEKCCV CRIIRNGFSV KREMNNGIGV FTASTSGRAF ESIAMDGGDG  360
TTERKALIVC RVIAGRVHRP VENVEEMGGL NGFDSLAGKV GLYTNVEELY LLNSRALLPC  420
FVVICKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	12	KRSEKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00149473001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143234.1	0.0	PREDICTED: uncharacterized protein LOC103866964
Refseq	XP_013742841.1	0.0	uncharacterized protein LOC106445758 isoform X1
TrEMBL	A0A398APW1	0.0	A0A398APW1_BRACM; Uncharacterized protein
TrEMBL	M4EC57	0.0	M4EC57_BRARP; Uncharacterized protein
STRING	Bra026366.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3553	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]