PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149663001
Common NameGSBRNA2T00149663001, LOC106442999
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 425aa    MW: 46068 Da    PI: 6.9783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149663001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-0999121326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++lC+f+a  G C+yGd+Ck+ H+
  GSBRNA2T00149663001  99 EKLCKFWAD-GNCPYGDKCKYLHC 121
                          579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.7091844IPR000571Zinc finger, CCCH-type
SMARTSM003560.0411943IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-696120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.79896123IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-698122IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-799121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-7100118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.6E-17119234IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.0E-5127166IPR001680WD40 repeat
SuperFamilySSF509784.21E-46127417IPR017986WD40-repeat-containing domain
PfamPF004004.6E-4130166IPR001680WD40 repeat
PROSITE profilePS5008213.015134175IPR001680WD40 repeat
PROSITE profilePS5029421.384134336IPR017986WD40-repeat-containing domain
PRINTSPR003202.2E-6153167IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780153167IPR019775WD40 repeat, conserved site
SMARTSM003201.3206243IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.0E-32235417IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.02250287IPR001680WD40 repeat
PfamPF004000.047255287IPR001680WD40 repeat
PROSITE profilePS5008211.979257296IPR001680WD40 repeat
PRINTSPR003202.2E-6274288IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7E-4290327IPR001680WD40 repeat
PfamPF004000.0024292326IPR001680WD40 repeat
PRINTSPR003202.2E-6314328IPR020472G-protein beta WD-40 repeat
SMARTSM0032014331374IPR001680WD40 repeat
SMARTSM003204.6377414IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDLDMNGGNT RVFQRLGGSS QKVCFHWRAG RCNRYPCPFL HRDSPPPAPF PGSSSSTNNK  60
RIADDDDSGF AGSSHRRGPG SGNNTWGRFG GNRTVTKTEK LCKFWADGNC PYGDKCKYLH  120
CWSQGDSFSL LTQLDGHQKV VTGIALPSGS DKLYTASKDE TLRIWDCASG QCTGVLNPGG  180
EVGCMISEGP WLLVGMPNLV KAWNIQTNVD LSLTGPVGQV YSLVVGTDLL FAGTQDGSIL  240
VWRYNTATNC FDPAASLTGH TLAVVSLYVG ANRLYSGSMD NSIKVWSLDN LQCVQTLTEH  300
TSVVMSLICW DQFLLSCSLD NTVKIWAATQ GGNLEVTYTH KEEYGVLALC GVHDAEAKPV  360
LLCSCNDNSL HLYDLPSFTE RGKILAKQEI RSIQIGPGGI FFTGDGTGQV KVWKWSTQPT  420
AIQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-211314178323Tako8
6g6n_A3e-211314178323Tako8
6g6n_B3e-211314178323Tako8
6g6n_C3e-211314178323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149663001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740076.10.0zinc finger CCCH domain-containing protein 48 isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLM4DBN40.0M4DBN4_BRARP; Uncharacterized protein
STRINGBra013894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]