PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149687001
Common NameGSBRNA2T00149687001, LOC106439690, LOC106443185
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 353aa    MW: 38724.6 Da    PI: 6.5903
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149687001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.76.4e-32130229197
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 
                          k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     +++++++ sk+ dq
  GSBRNA2T00149687001 130 KMFQRLFSETDEIAMLQGFLDFTSTRG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNalkkGRTEDKVTCSKDLDQ 218
                          58*************************.9*************************************99998776678889999******* PP

               DUF573  87 kifelskkiWg 97 
                          k+fels+kiWg
  GSBRNA2T00149687001 219 KAFELSRKIWG 229
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-26132229IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAPKDKIENP PAAASSSEEE EEEEESGSSV EASGSSSDDE AGHVQSKLTQ KPPKKKPDSD  60
SEEDESDSDS APPTKTKPLN AVVTSGSVPE SSTAKRSLKQ ADEEPKNKKV KTSATEQEVV  120
KKISGEDAKK MFQRLFSETD EIAMLQGFLD FTSTRGDPYE NMDAFCDYVK TLIDFNASKA  180
QIVTKLQRCK KKFVNIVKNA LKKGRTEDKV TCSKDLDQKA FELSRKIWGA NGVLPAKPRK  240
KFNDVVKSPP SPSHTPKKEV EKRKGSVVVD AQLSSSREVA LFFKAANVSV FGLDESTVSA  300
VWDMVEDGAK KREVEEKLKK LKDMQVELCL QRTALLDTTA KMIFKDNASS ST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.52690.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149687001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736645.10.0GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-100STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A398ALY60.0A0A398ALY6_BRACM; Uncharacterized protein
STRINGBra013873.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-91DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]