PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150485001

Common Name

GSBRNA2T00150485001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 397aa MW: 44853 Da PI: 5.6597

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150485001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117.2	1.6e-36	5	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+G+rFhPtdee+v +y ++k +e+++ +++ev+++vdiy+++Pw+Lp k +++++++ wyfF +++ ++++g+r++r tksg+Wk+tg GSBRNA2T00150485001 5 PVGYRFHPTDEEIVGDYVRPKnIESNTSRVDEVMNTVDIYEFDPWELPyKsRINSTDEVWYFFGCKKDQQNRGERQSRRTKSGFWKKTGV 94 79***************99567777889999**********96358888999**************************** PP NAM 89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 + ++++k ++e++g k+++vf p+ k+dWvmhe GSBRNA2T00150485001 95 TMDIMRKrgNREKIGEKRVFVFQyskILGGPSKPKSDWVMHEHV 138 **9877888*****854322567778******75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-38	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	40.734	4	164	IPR003441	NAC domain
Pfam	PF02365	7.9E-20	5	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MVDPPVGYRF HPTDEEIVGD YVRPKNIESN TSRVDEVMNT VDIYEFDPWE LPYKSRINST 60 DEVWYFFGCK KDQQNRGERQ SRRTKSGFWK KTGVTMDIMR KRGNREKIGE KRVFVFQYSK 120 ILGGPSKPKS DWVMHEHVAT FLSPDSPNQT MMMMKYTVCK VMFKGDERVL SSSSSSSAGQ 180 IQHHHLSLIP HVNSNNSGGL SSETEVDPRQ FTGFPHLEEE TMFVDEILRG FNNPPTDDWN 240 SLFSNDEEQG NTMFMQEDRN DYRPKMSLTG VFIGHSDDDS DSDSISSRTT TGSIKTSSTC 300 VTFGCSNHPT DLSESPSSST IESGSVTQEV SEALGTNTVT SERKMNPCDD DAQLSEIGGD 360 KIDQEMVIKN KRAGYIYRMM QKITKKIKLR SCISGT*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MVDPPVGYRF HPTDEEIVGD YVRPKNIESN TSRVDEVMNT VDIYEFDPWE LPYKSRINST  60
DEVWYFFGCK KDQQNRGERQ SRRTKSGFWK KTGVTMDIMR KRGNREKIGE KRVFVFQYSK  120
ILGGPSKPKS DWVMHEHVAT FLSPDSPNQT MMMMKYTVCK VMFKGDERVL SSSSSSSAGQ  180
IQHHHLSLIP HVNSNNSGGL SSETEVDPRQ FTGFPHLEEE TMFVDEILRG FNNPPTDDWN  240
SLFSNDEEQG NTMFMQEDRN DYRPKMSLTG VFIGHSDDDS DSDSISSRTT TGSIKTSSTC  300
VTFGCSNHPT DLSESPSSST IESGSVTQEV SEALGTNTVT SERKMNPCDD DAQLSEIGGD  360
KIDQEMVIKN KRAGYIYRMM QKITKKIKLR SCISGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	5	164	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	5	164	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	5	164	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	5	164	18	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-20	5	161	21	165	NAC domain-containing protein 19
3swm_B	1e-20	5	161	21	165	NAC domain-containing protein 19
3swm_C	1e-20	5	161	21	165	NAC domain-containing protein 19
3swm_D	1e-20	5	161	21	165	NAC domain-containing protein 19
3swp_A	1e-20	5	161	21	165	NAC domain-containing protein 19
3swp_B	1e-20	5	161	21	165	NAC domain-containing protein 19
3swp_C	1e-20	5	161	21	165	NAC domain-containing protein 19
3swp_D	1e-20	5	161	21	165	NAC domain-containing protein 19
4dul_A	1e-20	5	164	18	165	NAC domain-containing protein 19
4dul_B	1e-20	5	164	18	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150485001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119784.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Refseq	XP_022548699.1	0.0	NAC domain-containing protein 5-like
Swissprot	O81914	1e-118	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWX3	0.0	M4EWX3_BRARP; Uncharacterized protein
STRING	Bra033308.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-102	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]