PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150489001

Common Name

GSBRNA2T00150489001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 270aa MW: 29750.4 Da PI: 4.7084

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150489001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.8	1.2e-37	5	130	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +GfrF Ptd+e+v++y++ k +g + ++++++i+ vdi++++Pw+Lp k + +++++ wyfF+++d+ +g+r++r+tksg+Wk+tg GSBRNA2T00150489001 5 VGFRFIPTDQEIVDYYIRLKNRGGSdtNHVDKAIRAVDICSFDPWELPsKsRRESRDQVWYFFCRKDN---RGERQSRKTKSGFWKKTGP 91 7***************999998876777788***********53355557789**988...589************ PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++k ++e++g k++Lvf+ ++ +k+dWvmhey GSBRNA2T00150489001 92 TMDIFQKrgDREKIGEKRVLVFHLSGSK--SKSDWVMHEYV 130 **9887889******54443..59******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.356	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-38	4	150	IPR003441	NAC domain
Pfam	PF02365	4.1E-23	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MENRVGFRFI PTDQEIVDYY IRLKNRGGSD TNHVDKAIRA VDICSFDPWE LPSKSRRESR 60 DQVWYFFCRK DNRGERQSRK TKSGFWKKTG PTMDIFQKRG DREKIGEKRV LVFHLSGSKS 120 KSDWVMHEYV ATFLPPTDQM TYTLCKLKFK GDASDLPSSS GGDGGGGDGG CGDDGGGGCD 180 GDGGGGDRCD GGDGCGGGDG DGGGGGGVDE HNQYLITHMN NSGGYEDPSQ FNVSTDDFNC 240 FLNYNDDEEE QGNTMFMQYD RNDYRPNCP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-18	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-18	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-18	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-18	6	129	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	1e-17	6	129	23	143	NAC domain-containing protein 19
3swm_B	1e-17	6	129	23	143	NAC domain-containing protein 19
3swm_C	1e-17	6	129	23	143	NAC domain-containing protein 19
3swm_D	1e-17	6	129	23	143	NAC domain-containing protein 19
3swp_A	1e-17	6	129	23	143	NAC domain-containing protein 19
3swp_B	1e-17	6	129	23	143	NAC domain-containing protein 19
3swp_C	1e-17	6	129	23	143	NAC domain-containing protein 19
3swp_D	1e-17	6	129	23	143	NAC domain-containing protein 19
4dul_A	9e-18	6	129	20	140	NAC domain-containing protein 19
4dul_B	9e-18	6	129	20	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150489001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022559040.1	1e-127	NAC domain-containing protein 5-like
Swissprot	O81914	1e-69	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A3P6CE56	0.0	A0A3P6CE56_BRACM; Uncharacterized protein
STRING	Bra033302.1-P	1e-153	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	4e-71	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]