PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150491001
Common NameGSBRNA2T00150491001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 468aa    MW: 52204.4 Da    PI: 6.0025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150491001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.81.3e-3341512127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86 
                          p+G+rF+Ptdee+v +y ++k  +++  +++ev+++vdiy+++Pw+Lp k  ++k++++  wyfF ++++ ++  ++++r+t+sg+W++t
  GSBRNA2T00150491001   4 PVGYRFRPTDEEIVGHYVRPKNLESNtSHVDEVMNTVDIYSFDPWELPcKcsRIKSRDEvVWYFFGCKKQMHN--NKQRRSTASGFWSKT 91 
                          89*****************99665553788889***************64566666666699***99988765..6889999******** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfy.................kgrapkgektdWvmheyr 127
                          g ++++++k  ++e++g k+++vf                  k ++++ +k+dWvmhey 
  GSBRNA2T00150491001  92 GDTTQIIRKkgDHEKIGEKRVFVFKysskipggsksksksksKSKSKSKSKSDWVMHEYV 151
                          *******99777788*********88999999888877766556777778*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-363174IPR003441NAC domain
PROSITE profilePS5100535.5493174IPR003441NAC domain
PfamPF023655.0E-214151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVDPVGYRFR PTDEEIVGHY VRPKNLESNT SHVDEVMNTV DIYSFDPWEL PCKCSRIKSR  60
DEVVWYFFGC KKQMHNNKQR RSTASGFWSK TGDTTQIIRK KGDHEKIGEK RVFVFKYSSK  120
IPGGSKSKSK SKSKSKSKSK SKSDWVMHEY VATFSSPDSQ TMMMTYTVCK VMFKGDPTDL  180
PSSSSSAAGE NEHDLSLIPQ LNSNSSGGLS KETEVQNPDQ ITSSVSLIPH VNNNSGGLVA  240
ETEVEYRDRG GRSHQITSSI SLIPHLNNNN SGVLLSTETE VDPRLFSSFL YLEEDARIED  300
ATLRALNYDG AKEDEEEEEL VNLWSMQEDR NDHRPKMPLT GFISDDDDSD SESLYATTTC  360
SIKSSTTCVS FASSNPPIDQ IIYLPESPRS TIESVSLTQE VSKALGANSA ISEKKMSPCD  420
DDAQVSEIGG DQMGQEMVIK HKRAGFIYRM IQKFAKKIKL CSCVSRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-17417118162NO APICAL MERISTEM PROTEIN
1ut4_B7e-17417118162NO APICAL MERISTEM PROTEIN
1ut7_A7e-17417118162NO APICAL MERISTEM PROTEIN
1ut7_B7e-17417118162NO APICAL MERISTEM PROTEIN
3swm_A7e-17417121165NAC domain-containing protein 19
3swm_B7e-17417121165NAC domain-containing protein 19
3swm_C7e-17417121165NAC domain-containing protein 19
3swm_D7e-17417121165NAC domain-containing protein 19
3swp_A7e-17417121165NAC domain-containing protein 19
3swp_B7e-17417121165NAC domain-containing protein 19
3swp_C7e-17417121165NAC domain-containing protein 19
3swp_D7e-17417121165NAC domain-containing protein 19
4dul_A7e-17417118162NAC domain-containing protein 19
4dul_B7e-17417118162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150491001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666356.10.0NAC domain-containing protein 4-like isoform X1
TrEMBLA0A3P6D1P30.0A0A3P6D1P3_BRACM; Uncharacterized protein
STRINGBra033300.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-86NAC domain containing protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]