PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150492001

Common Name

GSBRNA2T00150492001, LOC106370802

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 252aa MW: 28663.2 Da PI: 8.7525

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150492001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.6	9.7e-40	5	132	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +G+rF Ptdeelv++yL+ k +g + ++++vi++++i++++Pw+Lp + +++++++ wyfF +++k+y++g+r+ r+tksg+Wk+tg GSBRNA2T00150492001 5 VGLRFLPTDEELVDHYLRLKNHGGSntSPVDQVISTINICNFDPWELPrHsSMESKDQVWYFFGRKEKRYNRGERQIRKTKSGFWKKTGV 94 7*****************9998866778889**********95247888999**************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++k ++e++g k++Lvf+ + g+kt+W+mhey GSBRNA2T00150492001 95 TMDIKRKrsaHREKIGEKRVLVFH----SGGSKTNWIMHEYD 132 *998878888******....6788*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.482	3	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.1E-40	4	152	IPR003441	NAC domain
Pfam	PF02365	9.7E-23	5	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MENMVGLRFL PTDEELVDHY LRLKNHGGSN TSPVDQVIST INICNFDPWE LPRHSSMESK 60 DQVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR KRSAHREKIG EKRVLVFHSG 120 GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKGEAREIYS PGSGIDAHTL SLVTHMNNSG 180 GESSPAASEK PKNAHQLSGF SDKKQETELE EAIHGAFDNL SSYDWKYLLD DAEQSKTVAM 240 QKSLTGFLDW A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-26	6	152	23	168	NAC domain-containing protein 19
3swm_B	9e-26	6	152	23	168	NAC domain-containing protein 19
3swm_C	9e-26	6	152	23	168	NAC domain-containing protein 19
3swm_D	9e-26	6	152	23	168	NAC domain-containing protein 19
3swp_A	9e-26	6	152	23	168	NAC domain-containing protein 19
3swp_B	9e-26	6	152	23	168	NAC domain-containing protein 19
3swp_C	9e-26	6	152	23	168	NAC domain-containing protein 19
3swp_D	9e-26	6	152	23	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150492001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666240.1	0.0	NAC domain-containing protein 5
Swissprot	O81914	5e-84	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW4	0.0	M4EWW4_BRARP; Uncharacterized protein
STRING	Bra033299.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	2e-86	NAC domain containing protein 5

Link Out ? help Back to Top
Entrez Gene	106370802

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]