PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150494001
Common NameGSBRNA2T00150494001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 259aa    MW: 29363.1 Da    PI: 6.9575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150494001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM881.8e-2751366127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                           F+P ++el+++yL++k+++++ ++e+ i+ev+i+++eP dLp  +k++ + + wyf s+ +k   + +r++ra k+g Wk tg++ +++
  GSBRNA2T00150494001   5 TFNPPEDELINYYLNNKITENDDPEEKQINEVNICHHEPADLPglAKIE-SGHTWYFISPVEKF-GKLNRRKRASKTGHWKITGNSCTIK 92 
                          7*********************999899***************422443.45678888877665.6788999****************** PP

                  NAM  94 skkgelvglkktLvfykgrapkge..........ktdWvmheyr 127
                          +++g+ +glkk Lvf ++++++++          k +W++he++
  GSBRNA2T00150494001  93 DTDGNPIGLKKFLVFQENKNRRSStllptpaqqhKFTWIIHEFH 136
                          ****************65544443444445555599*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.8761155IPR003441NAC domain
SuperFamilySSF1019411.07E-324155IPR003441NAC domain
PfamPF023651.7E-164136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNRYTFNPPE DELINYYLNN KITENDDPEE KQINEVNICH HEPADLPGLA KIESGHTWYF  60
ISPVEKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPIG LKKFLVFQEN KNRRSSTLLP  120
TPAQQHKFTW IIHEFHSFLH HPNKDAFVLC KLKKKTRSRS GVAVDASPAV TDLSPTIISD  180
PILNDSLMLT HHKDPVEDYG GDYCNDLEEL TPELDSSSGL LRGENGHVYG QNTVENSNVS  240
DTTLRKKLLS YFIGIEMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150494001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-166PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A3P6DBT81e-178A0A3P6DBT8_BRACM; Uncharacterized protein
STRINGBo5g002870.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.13e-89NAC domain containing protein 49
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]