PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150520001
Common NameGSBRNA2T00150520001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 541aa    MW: 59461.7 Da    PI: 6.5773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150520001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12382427454
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  GSBRNA2T00150520001 382 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 427
                          799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-499199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18378447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-14381432No hitNo description
Gene3DG3DSA:4.10.280.109.0E-18382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10382427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MTVGSDDNLQ NKLSDLVETP NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGER  60
SEMMRMLSMG REEETHQTLR KRVLQKLHAL FGGLDDEEDS CALVLDRVTD TEMFLLASMY  120
FSFPRGQGGP GKCFHSSQPV WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG  180
STSCLPHSDE SLSSIRLSFS SPPPPPPPPP PVRLPVVVAN HNDDNSSSKI FGKDLHSSSG  240
FLHQQQHRQF REKLTVRKMD DNRVPKRLDG NNNRFMFSNP ITTMTTSTWI PPEAPTREDF  300
KFLPLQQTSS SSHRLLPPAQ MQIDFSGASS RPSDNNSDGG GGGGGGGADW SDLVGGVDES  360
GGDNRPRKRG RRPANGRAEA LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA  420
VSYINELYAK LKVMEAEREK LGYSSNPLIC LEPPAVNVQT AGEDVAVTVN CSLDSHPASR  480
IFHAFEEAKV EVINAKLEVP QDVVLHTFVI KSEEVTKEKL ISALSREQSG SVQSRTSSGR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26376441265Transcription factor MYC2
5gnj_B2e-26376441265Transcription factor MYC2
5gnj_E2e-26376441265Transcription factor MYC2
5gnj_F2e-26376441265Transcription factor MYC2
5gnj_G2e-26376441265Transcription factor MYC2
5gnj_I2e-26376441265Transcription factor MYC2
5gnj_M2e-26376441265Transcription factor MYC2
5gnj_N2e-26376441265Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.132010.0microspore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150520001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548937.10.0transcription factor bHLH13-like isoform X1
RefseqXP_022548938.10.0transcription factor bHLH13-like isoform X2
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLM4EWT80.0M4EWT8_BRARP; Uncharacterized protein
STRINGBra033273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]