PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150582001
Common NameGSBRNA2T00150582001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 313aa    MW: 34815.1 Da    PI: 8.3492
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150582001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.16.7e-40168245178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk ++
  GSBRNA2T00150582001 168 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQ 245
                          6*************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114132.223166243IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.0E-34166230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.37E-37167246IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30169242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLDYEWDNPS VIILSGEDRS HHHQQEPDPT RVLSIFDPTQ THHSQSSYSN TCPPLFPSLS  60
NQQHLTVYGH QTSNQFHPSF VYDPRITNHP YSPSSDSIYG HPHHSALFSF DQTGSGGSGS  120
SYNFLIPKTE VDVSRPLDFT SNRIGLNLGG RTYFSAADDD FVSRLTPRCQ AEGCNADLSH  180
AKHYHRRHKV CEFHSKASTV VAAGLSQRFC QQCSRFHLLS EFDNGKRSCR KRLADHNRRR  240
RKCHQSISKP TPDTTTTPQS PNDSGVKSSS SPSNALPTIS LECFRQKQFQ TTTTPSSSTS  300
ASSSNSMFFS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301692421184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:12671094}.
UniprotTISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:17093870}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150582001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116424e-76AJ011642.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 8.
GenBankAK1181744e-76AK118174.1 Arabidopsis thaliana At1g02065 mRNA for putative squamosa promoter binding protein 8 (SPL8), complete cds, clone: RAFL19-49-D21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119750.10.0PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_013665582.10.0squamosa promoter-binding-like protein 8
SwissprotQ8GXL31e-117SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A397XKV00.0A0A397XKV0_BRACM; Uncharacterized protein
TrEMBLM4EWN70.0M4EWN7_BRARP; Uncharacterized protein
STRINGBra033221.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-116squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]