PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150617001
Common NameGSBRNA2T00150617001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 461aa    MW: 50395 Da    PI: 7.0081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150617001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-053413791255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GSBRNA2T00150617001 341 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 379
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-11339392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-5339383No hitNo description
Gene3DG3DSA:4.10.280.102.0E-8343386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MCQASKKLRA TLINISSLIH IDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH  60
QWSPGGISLN CVSLSHNFNN EMLNTRDENN SNNSTSECMS LSNIHNHSLI QQQDFPLQWT  120
HNESSYHHHE GLHKIKEELS SATTSDHQQG MPRFTDMLNS PVITNYLKIN EHKDYTEKLL  180
LNTISAGVPI NGDYSNSLPS SSSSSSPSSQ SHRGSFSQIY PSVNISSLSE SQRISNTPRP  240
FDMNMQILDG RLFEGNVLVP PLNSQEIRGN FTPFGLPFHH HLQQTLHHPS SSPSHQMEIY  300
SNEPQASEGK RHNLMAPKAG ETASKKPRVE SRSSCPPFKV RKEKLGDRIA ALQQLVSPFG  360
KTDTASVLME AIGYIKFLQS QIETLSVPYM RASRNRPGKT SQLGSIPQEG GEEETRDLRS  420
RGLCLVPLSC MTYVTGDGGD GGGGVGSGFW PTPPGFGGGT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150617001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895550.0AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663231.10.0transcription factor bHLH110-like isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A3P6BXF80.0A0A3P6BXF8_BRACM; Uncharacterized protein
STRINGBra010925.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]