PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150656001
Common NameGSBRNA2T00150656001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 124aa    MW: 14642.7 Da    PI: 10.5293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150656001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.21.1e-08628224
                  NAM  2 ppGfrFhPtdeelvveyLkkkve 24
                         p+GfrFhPtdee++ +yL++k  
  GSBRNA2T00150656001  6 PVGFRFHPTDEEIIGYYLREKNM 28
                         89*****************9975 PP
2NAM23.21.9e-0727703879
                  NAM 38 diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk 79
                         ++ +++Pw+Lp++ ++  +++ wyfF+++d+ky + k+k ++t+
  GSBRNA2T00150656001 27 NMDSFDPWELPSHSSSirKDDVWYFFARKDNKYVHTKKKVKTTN 70
                         56689******53333336779***********98888777664 PP
3NAM22.82.4e-07751155999
                  NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                            Fsk++ ky++g r++r+ +sg+Wk+tg + ++++ + ++
  GSBRNA2T00150656001  75 PLFSKKEDKYNRGGRQSRKKSSGFWKKTGVTVNMINPTVQQ 115
                          579***************************99988864444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-17569IPR003441NAC domain
PROSITE profilePS5100518.5345123IPR003441NAC domain
PfamPF023652.4E-146105IPR003441NAC domain
SuperFamilySSF1019413.14E-576106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MVDPHPVGFR FHPTDEEIIG YYLREKNMDS FDPWELPSHS SSIRKDDVWY FFARKDNKYV  60
HTKKKVKTTN ITEEPLFSKK EDKYNRGGRQ SRKKSSGFWK KTGVTVNMIN PTVQQPMTRK  120
KKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150656001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482381.19e-26PREDICTED: NAC domain-containing protein 5-like isoform X1
RefseqXP_018482388.18e-26PREDICTED: NAC domain-containing protein 5-like isoform X2
TrEMBLM4D3425e-86M4D342_BRARP; Uncharacterized protein
STRINGBra010895.1-P8e-87(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-25NAC domain containing protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]