PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150898001
Common NameGSBRNA2T00150898001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 593aa    MW: 66197.5 Da    PI: 4.2947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150898001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08428470145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r rW++++ +l++++++++G++  + + + ++  Rt+ q+k+++ 
  GSBRNA2T00150898001 428 RTRWSKQDTQLFYEGIQEFGSN-LSMVQQLFP-ERTRQQIKLKYK 470
                          78******************99.*********.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-26421505No hitNo description
Gene3DG3DSA:1.10.10.602.5E-6425470IPR009057Homeodomain-like
SMARTSM007174.1E-7427475IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-9429479IPR009057Homeodomain-like
CDDcd001674.49E-5430470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDLDFDDESA APAARAGAKF KPRGRPQPKK KQAQTTLSTD VAKEKLLTQS EHPVSLDASS  60
AYPSNVSASE TTVPDSGTIS QATMGTISKE SVSGGASVLR ACTNLNSEGK RCVDDTETAP  120
AYPDDPRRQD SAAFGDFVTS ETDEVIDDQT QRMQTGEEEE ECDWNMETLD IVQEECVTSA  180
YEQHTGKFQP KPRLLDTVIE EEPESHYSVD DDTTGANPSE FMVNEESRND EFNINTTFHG  240
DHQEDEHNIP EQAPNVLEQE HHVVSPSNND TVMGEGATQS NEAETGADKK GKKKRGRKKK  300
TTTSEEEPNK PPPETTKKFK HSSRRQKNTL DKELLETPDD EIKHLPIRDM LRLVAYRESL  360
EKKEAKGAPV VPPTQESNTH ASEDNHYYSQ GFDAEDEFGM EEGENHEAPV VKPDSPVNYQ  420
TYMNKTPRTR WSKQDTQLFY EGIQEFGSNL SMVQQLFPER TRQQIKLKYK LEERKNPLKL  480
NDALSTRSKK LTHYHNVIKK LQEEAAAAKE GEEEEEEGEE AGEEAETTTD VPENVSEPTK  540
TEETERDGDG VAGVKESDGG DVENGVRSDG GDEIDDNEGD DDDFWNSYKS EM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150898001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895451e-120AC189545.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656697.10.0glutamic acid-rich protein-like
TrEMBLA0A397YJD90.0A0A397YJD9_BRACM; Uncharacterized protein
STRINGBra010701.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-173MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]