PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151054001
Common NameGSBRNA2T00151054001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 207aa    MW: 22575.9 Da    PI: 6.79
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151054001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000184668123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C + F++   L  H+++H
  GSBRNA2T00151054001 46 YACNFCRREFRSAQALGGHMNVH 68
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-64373No hitNo description
PfamPF139122.5E-54669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MYGGAEMWNP SKVERLEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYACNF CRREFRSAQA  60
LGGHMNVHRR DRASKAHQGP AAAVAARSGG RSRGGKKTVL SSCVLPTATL IIQSTASNNE  120
GLSHFYQLQN PNSMFGHSSD TVNFYGSSSF PSSNLDFSVL NSPVEVPPRF IEYSTGDDES  180
IGSMKETKRT SVGEPDLELR LGHNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124168229superman protein
2l1o_A1e-124168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151054001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596098.11e-153PREDICTED: uncharacterized protein LOC106304236
RefseqXP_013646948.11e-153zinc finger protein 11-like
RefseqXP_013706190.11e-153zinc finger protein 11-like
TrEMBLA0A0D3DEQ11e-151A0A0D3DEQ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ER721e-151A0A3P6ER72_BRAOL; Uncharacterized protein
STRINGBo7g105490.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-101C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]