PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00151254001

Common Name

GSBRNA2T00151254001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1886aa MW: 208283 Da PI: 6.9777

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00151254001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	1129	1170	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d +++G++ +k+Ia+++ +t +c+++++k GSBRNA2T00151254001 1129 PWTPEEKETFLDMLAMHGKD-FKKIASHLS-QKTTADCVEYYYK 1170 8***************99.*****.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.92E-15	1113	1174	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-8	1120	1171	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.504	1125	1176	IPR017884	SANT domain
SMART	SM00717	6.8E-12	1126	1174	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-10	1128	1170	IPR001005	SANT/Myb domain
CDD	cd00167	6.78E-9	1129	1171	No hit	No description
PROSITE profile	PS51293	10.916	1331	1382	IPR017884	SANT domain
SMART	SM00717	3.0E-5	1332	1380	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.77E-8	1335	1382	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-4	1336	1377	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1886 aa Download sequence Send to blast
MPQDHASWDR KELHRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCNGKQG 60 GRYDFEEETS HGYTSSRSSA RMFENDYHRP LAPRGDWRYA RNFRDDRVPL SHKDWKCNTW 120 EMNSGSSRDF ERPFGVRNGR RSVDERPPHA SDTHTALVNS WDPPPNFTHQ PEMCTPVRTL 180 KFTNEHNSSD QRPSSLPIDP HSDRPSSENS YDNKECSTEN QCNGLMYARR SANDNSLDPP 240 IRNTELEGTR KPHLRDMQDN RLRGVGDLDG AMKSGKESSL GAVGKLPVWP QDHTSWDRKE 300 LLRPRKRERP SEPPFDSPSS HHVPREYSRW GSGDFRRPNC HGKQGGRYQF AEESSHDYYR 360 QSAPRGDWRY TRNCRDDRVP LSQKEKCSTL EMSNGSSRAF ERPCGVRNGR RSVDERPLHA 420 SDTHSTLVNS SDSPNSTHQP DIEMCNPVQT LKFKNEPKFS DQRPSLPIDP HSDCLSLFER 480 PTSEKSYENK ECSTANQSNG LMYARRLAND NSLDPPIRHA ELEGTRKQLH LENMEDNRLR 540 GVSDLEGTMK SGKESSLGAI GKLPVCSGSF SSQSSGFSHS SSFKSLGVGD SSDQKQKVLP 600 KIVAATQSSS GDATACATTT LSEEMISRKK RLGWGEGLAK YENKKVDVNT IEDGTALLEN 660 GTGELHSLNK NIAGESPTAA IAPGYGSPTT PSSVDCSSSP GFADKSSAKA AIGANDISNI 720 CRSPSPVSSD YLERLPINIE ELDNVSMERF GCLLSELLGT DDPVIGDFSS AQLTSMNKLL 780 AWKGDILKAV EMAESEIDML ENKQKALKLE GGRQCRVVEP SSYLCQGDEN VSKKQESPCI 840 LAPKIVASSV AETLVRDPVH QAVSAKAPVE IFEDSPGEVK SLTQAFATVG SNEDSLPMPS 900 VRVVASFKAI NTSAVTSQEA IDLFSADDMV SNEDLHCAKL LSTNKIYASE SSGVFNELFP 960 REFSSFDDSR FLGVRQRQFD SHVKEKIADR IELLRAREKI LLLRFKAFQI AWKKDLHQLA 1020 LTKYQPKSNK RTEVLPNAKI SGRLKLPQPL RLRLSSSAQR RDSVASTTEL VSYMKKLQNG 1080 TRLKPFRDIL RMPAMILDEK ERARSRFISS NGMIEDPCDV EKERTKINPW TPEEKETFLD 1140 MLAMHGKDFK KIASHLSQKT TADCVEYYYK NHKSDSFGKI KKQRGYGKEG KHTYMLAPRK 1200 KWNREMGAAS LDILGAVSII ASNAGKVAST RQISSKRITL RGSSSSSSLQ HDGKYSEGCS 1260 HSSGFPRKRN LGADVVAVGP LSSEQINSRE DCMYHLKIDP AAKKPRISHS THNENSNEDE 1320 DSCSEESCEE TGPIHWTDAE RSAFIQGFSL FGKNFASLSS FVRTRSPDQC RVFFSKVRKC 1380 LGLECRQSGS ANVSTSASVD NANEGVGGSD LEDPCAMESN SAICNDGVSA KIGLNSPTSP 1440 FNMNQERANH SGSANVEAGL SRSEQDIGLT LLCLKDGTSL VNNACINGDF PGLVSEPCRD 1500 LVNNDTVESQ CDLTSVAAEK IKSSDQLSME IDEGNLTPIA VSSDPLYCGA SALSGTIVET 1560 PTESSHKGSG GEGTAFPNQS STQQEGVIQA ANRSINYGLE AEAARSSFRY PECLHHVPIE 1620 EDLVDVSVPQ GDPSCHTESE LSNSLVVQTN NVGWQFSEVN LNLDRRLRIV GHVKPEQSGR 1680 LNATSTEPCQ IPWRSFTQDP SRIIRSKSDL IVNTQHTGEG FSLKKCTSSA TKPLTVFHKD 1740 GLSGHSRSHS FSLSDSERLD KNGDVKLFGT VLTADDNGSK QKQNPGGSIR SSSTLSGDLQ 1800 YINQQHLQNV PITSYSFWDG SNIQTVLTSL PESAKLLASY PEALSTHLKQ QIVSSKEIQL 1860 DVSGILSFGK HIEERADVSS GKDER*

Sequence ? help Back to Top

Protein Sequence Length: 1886 aa Download sequence Send to blast

MPQDHASWDR KELHRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCNGKQG  60
GRYDFEEETS HGYTSSRSSA RMFENDYHRP LAPRGDWRYA RNFRDDRVPL SHKDWKCNTW  120
EMNSGSSRDF ERPFGVRNGR RSVDERPPHA SDTHTALVNS WDPPPNFTHQ PEMCTPVRTL  180
KFTNEHNSSD QRPSSLPIDP HSDRPSSENS YDNKECSTEN QCNGLMYARR SANDNSLDPP  240
IRNTELEGTR KPHLRDMQDN RLRGVGDLDG AMKSGKESSL GAVGKLPVWP QDHTSWDRKE  300
LLRPRKRERP SEPPFDSPSS HHVPREYSRW GSGDFRRPNC HGKQGGRYQF AEESSHDYYR  360
QSAPRGDWRY TRNCRDDRVP LSQKEKCSTL EMSNGSSRAF ERPCGVRNGR RSVDERPLHA  420
SDTHSTLVNS SDSPNSTHQP DIEMCNPVQT LKFKNEPKFS DQRPSLPIDP HSDCLSLFER  480
PTSEKSYENK ECSTANQSNG LMYARRLAND NSLDPPIRHA ELEGTRKQLH LENMEDNRLR  540
GVSDLEGTMK SGKESSLGAI GKLPVCSGSF SSQSSGFSHS SSFKSLGVGD SSDQKQKVLP  600
KIVAATQSSS GDATACATTT LSEEMISRKK RLGWGEGLAK YENKKVDVNT IEDGTALLEN  660
GTGELHSLNK NIAGESPTAA IAPGYGSPTT PSSVDCSSSP GFADKSSAKA AIGANDISNI  720
CRSPSPVSSD YLERLPINIE ELDNVSMERF GCLLSELLGT DDPVIGDFSS AQLTSMNKLL  780
AWKGDILKAV EMAESEIDML ENKQKALKLE GGRQCRVVEP SSYLCQGDEN VSKKQESPCI  840
LAPKIVASSV AETLVRDPVH QAVSAKAPVE IFEDSPGEVK SLTQAFATVG SNEDSLPMPS  900
VRVVASFKAI NTSAVTSQEA IDLFSADDMV SNEDLHCAKL LSTNKIYASE SSGVFNELFP  960
REFSSFDDSR FLGVRQRQFD SHVKEKIADR IELLRAREKI LLLRFKAFQI AWKKDLHQLA  1020
LTKYQPKSNK RTEVLPNAKI SGRLKLPQPL RLRLSSSAQR RDSVASTTEL VSYMKKLQNG  1080
TRLKPFRDIL RMPAMILDEK ERARSRFISS NGMIEDPCDV EKERTKINPW TPEEKETFLD  1140
MLAMHGKDFK KIASHLSQKT TADCVEYYYK NHKSDSFGKI KKQRGYGKEG KHTYMLAPRK  1200
KWNREMGAAS LDILGAVSII ASNAGKVAST RQISSKRITL RGSSSSSSLQ HDGKYSEGCS  1260
HSSGFPRKRN LGADVVAVGP LSSEQINSRE DCMYHLKIDP AAKKPRISHS THNENSNEDE  1320
DSCSEESCEE TGPIHWTDAE RSAFIQGFSL FGKNFASLSS FVRTRSPDQC RVFFSKVRKC  1380
LGLECRQSGS ANVSTSASVD NANEGVGGSD LEDPCAMESN SAICNDGVSA KIGLNSPTSP  1440
FNMNQERANH SGSANVEAGL SRSEQDIGLT LLCLKDGTSL VNNACINGDF PGLVSEPCRD  1500
LVNNDTVESQ CDLTSVAAEK IKSSDQLSME IDEGNLTPIA VSSDPLYCGA SALSGTIVET  1560
PTESSHKGSG GEGTAFPNQS STQQEGVIQA ANRSINYGLE AEAARSSFRY PECLHHVPIE  1620
EDLVDVSVPQ GDPSCHTESE LSNSLVVQTN NVGWQFSEVN LNLDRRLRIV GHVKPEQSGR  1680
LNATSTEPCQ IPWRSFTQDP SRIIRSKSDL IVNTQHTGEG FSLKKCTSSA TKPLTVFHKD  1740
GLSGHSRSHS FSLSDSERLD KNGDVKLFGT VLTADDNGSK QKQNPGGSIR SSSTLSGDLQ  1800
YINQQHLQNV PITSYSFWDG SNIQTVLTSL PESAKLLASY PEALSTHLKQ QIVSSKEIQL  1860
DVSGILSFGK HIEERADVSS GKDER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-16	1087	1177	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-16	1087	1177	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10239	0.0	microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00151254001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136665.1	0.0	PREDICTED: uncharacterized protein LOC103860750
TrEMBL	A0A398A3X0	0.0	A0A398A3X0_BRACM; Uncharacterized protein
STRING	Bra012815.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]