PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151319001
Common NameGSBRNA2T00151319001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1024aa    MW: 111845 Da    PI: 7.5818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.6e-0610021023426
                           ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                           ++C+ f+++G Ck G++C+F H+
  GSBRNA2T00151319001 1002 KICK-FYESGNCKKGASCSFWHP 1023
                           6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001510.003959149IPR019835SWIB domain
SuperFamilySSF475923.92E-1967145IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.2E-2168150IPR003121SWIB/MDM2 domain
PfamPF022018.8E-1273144IPR003121SWIB/MDM2 domain
PROSITE profilePS5136018.756203336IPR004343Plus-3 domain
SMARTSM007193.4E-47203313IPR004343Plus-3 domain
SuperFamilySSF1590421.44E-25204332IPR004343Plus-3 domain
PfamPF031261.4E-17208311IPR004343Plus-3 domain
SuperFamilySSF552778.24E-16464520IPR003169GYF domain
PROSITE profilePS5082915.615467521IPR003169GYF domain
CDDcd000725.42E-19467524No hitNo description
SMARTSM004441.2E-14468523IPR003169GYF domain
Gene3DG3DSA:3.30.1490.407.9E-17469521IPR003169GYF domain
PfamPF022131.3E-11469513IPR003169GYF domain
SuperFamilySSF902295.89E-69981022IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1559981023IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-410021022IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MRAYNPWKEV PYIAPKVELR NDHTRSSALD AAENGIKRRK TSDSPTLPSK LDAKNPSNTP  60
KKRPGDTNWA TKELLEFLSF MRNGDTSVIS QFDVQGLLLD YINKKNLRDP HQESQVICDL  120
MLVKLFGKQR VGHVEMLKLL ESHFLIQEKP KDEKTTNGET THAVPSQVDE DKGHDQPVRD  180
RRRKMHRKTV GRVQNESLDA YAAIDVHNIN LIYLRRKFLE TLLDDINKVH EKVVGTILRI  240
KVSGSDQKLD IHRLVQVVGT SKAAATYQLG AKTTDVMLEI LNLEKREVIS IDQLSDQNVT  300
EDECKRLRQS IKCGLNKRLT VGDILKTATT LQAMRINEAL EAEILKVKHL RDRASEKGIL  360
ESPEHRQRLL QEVPEVHTDP SMDPSHPSAE DSVLGTRKQD NHIKAPSKGP KKKGNTLNNL  420
GNNAQTKYDA PVLRSRKALN VAKKDDCSKV HNNSSDIQES GKDDEESEIW HYRDPTGKTQ  480
GPFSMGQLRR WKSSGHFPPY LRIWKAHENQ DESVLLTEAL AGRFDKATTS PSSSLLPQEL  540
KLSQHDSGRT GVDGDCLQKN LTPVSNSAAS SSSSTVSALP NDPKEKQVAT LLPCSGKVKD  600
GNSVRSQPQV SCSASMSVVP GHVVSPDAGA TSGADGKTVE EGTNGGSVHA PNLNQEIHVP  660
DIPSPTPKSS SEDLEAQAAE TIQSLSSCVL AKGTSGVTWS TTTTTTTDAV TTTSSVMVTG  720
GQLPQVTHQN AAVSAAPSVK PIDLAADHAT ATQTSDNTQV AHSSGWPAIV ADPDECDESV  780
SDLLAEVEAM EQNGLPSSPT STFHYDDDDL TKGPEKDFFN PVARLSLTPE TCRMNTSQPN  840
ILDNVSTGKS SMGTESKDNT LFNHCRTSGP ELLLFAPPVP ASISQDLTLT TTALRLGSDT  900
AVEAGSVQRL PKSVSGVSLE PSPCPRGNTE RSPRGNTERS PRGNGSHQRR SGGHSRDRQW  960
WNNGHNTSVN NSHNNRQWPN STRHGYDHGS GSYTAHPPKG LKICKFYESG NCKKGASCSF  1020
WHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151319001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737053.10.0zinc finger CCCH domain-containing protein 44-like
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLM4D8Q80.0M4D8Q8_BRARP; Uncharacterized protein
STRINGBra012868.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]