PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151534001
Common NameGSBRNA2T00151534001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 317aa    MW: 36115.4 Da    PI: 9.7602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151534001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000194117123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ Cg++F  ++ L  H r  H
  GSBRNA2T00151534001  94 YFCGVCGRRFYANEKLIAHFRQiH 117
                          78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.0E-530128IPR029060PIN domain-like
PfamPF019361.5E-735247IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576672.83E-592121No hitNo description
PROSITE profilePS5015711.71894122IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
CDDcd061671.40E-10160246No hitNo description
Gene3DG3DSA:3.40.50.10101.0E-5179249IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MFSRFLHRIQ SSKPQITSLN STKPFTSLNP KPRTRVAVFW DLDNKPPASH PPHDAAVKLR  60
TAASSFGSVK LMVAYANRHA FSYKTGLSKP AEPYFCGVCG RRFYANEKLI AHFRQIHETE  120
NQKRVRQIES AKGHQRVRLV AKYSMKMEKY KRAARNVLTP KEGYGLAEEL TRGGFWVKMV  180
SDKPEAADRA LKEHMVDVMD RREAECLVLV SDDSGFAEVL WEAKERCLRT VVIGDLSEGK  240
LKRVADVAYS WKEVVMGKAK KEVEKVVGKW RDRDVLKTLE WCYDPVLEKE RAEMGDGGDW  300
WEMDDEDGAG SSRPCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151534001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558301.10.0uncharacterized protein LOC106414984
TrEMBLA0A3P6A9G80.0A0A3P6A9G8_BRACM; Uncharacterized protein
STRINGBra000767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-158C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]