PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151670001
Common NameGSBRNA2T00151670001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 311aa    MW: 32819 Da    PI: 6.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09156200554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  GSBRNA2T00151670001 156 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 200
                          99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASNNNPHEN LSDQTPSDDF FDQILGLPNF SASSSDGGLG GGGGGGGAPP MMLQLGSGEE  60
GSHMAGLVGG SGPSVFHNQM FPLGLSLDQG KGPVFLRPEG GGLHASVNRS SSSSSSMKGP  120
VFHGQPMQQP APAAPHQPTS IRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPT  180
VNKTDRAAMI DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTDMPLSSS VEDETSEGGR  240
TPQPAWEKWS NDGTERQVAK LMEENVGAAM QLLQSKALCM MPISLAMAIY HSQPPDTSSV  300
VKAETNPPPQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.94251e-151leaf| seed| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151670001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134422.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-169UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A397ZZ340.0A0A397ZZ34_BRACM; Uncharacterized protein
STRINGBra000872.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-152bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]