PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152426001
Common NameGSBRNA2T00152426001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 160aa    MW: 17961.8 Da    PI: 5.9086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152426001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.6e-101071504690
                  NAM  46 dLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          dL   v ++++ew fF++ d+ky++g+r nrat +gyWk   k+ 
  GSBRNA2T00152426001 107 DLS-VVGTTDSEWLFFCPLDRKYPSGNRMNRATVAGYWKVAEKTV 150
                          554.5567789****************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.36855159IPR003441NAC domain
SuperFamilySSF1019413.79E-9113149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MALMLARSHE NDFAFQALET VDEALVTFCG VFDGWSFRSS CCLSDIYIAC EVAVFLSCLR  60
YIESSTMLIL YLSLDIPMMD KVALLVFAFF TELCRVSKDQ RKRASADLSV VGTTDSEWLF  120
FCPLDRKYPS GNRMNRATVA GYWKVAEKTV RLSQGALRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.67013e-42seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152426001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204401e-46KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3ASL51e-99A0A0D3ASL5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DAI31e-101A0A3P6DAI3_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g103370.11e-100(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.29e-22TCV-interacting protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]