PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152581001
Common NameGSBRNA2T00152581001, LOC106348842
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 441aa    MW: 49831.7 Da    PI: 4.8547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152581001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-181099194
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         ffkv+   ++++s+ + +p ++ +e     + +kt++l+ + g  W+v ++ ++  ++++l++GW +Fvk+n L +gDf++F ++g++ fe 
  GSBRNA2T00152581001 10 FFKVF--ISHFSSDSMLIPISYYDELP--RHLPKTVILQGTGGCLWKVAMRLKQEEEEVYLEQGWPKFVKDNALVDGDFMTFVYNGDNIFEV 97
                         89999..9999999*********8775..55899****************99999999***************************9998855 PP

                         EE CS
                   B3 93 vv 94
                          +
  GSBRNA2T00152581001 98 SI 99
                         44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-224105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-204105IPR015300DNA-binding pseudobarrel domain
CDDcd100179.87E-178100No hitNo description
PROSITE profilePS5086313.7048103IPR003340B3 DNA binding domain
PfamPF023622.2E-161097IPR003340B3 DNA binding domain
SMARTSM010198.5E-1710103IPR003340B3 DNA binding domain
SMARTSM010190.88343435IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-4351430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-5352430IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MASTDSLPRF FKVFISHFSS DSMLIPISYY DELPRHLPKT VILQGTGGCL WKVAMRLKQE  60
EEEVYLEQGW PKFVKDNALV DGDFMTFVYN GDNIFEVSIY GLDGCKQARA MAEEEEEGKD  120
SICALSSDDT EDTNAESESA NTVQRSNDKG KAKVEADDDE EEEDSVYSLS NSKDTDTGTS  180
SEFEMANTIF RSKTKGKSKE EVIKEESDGK EDSDHSLNSE VKETDTGSES RIPKNKGKKK  240
KEVVESSDSD YAEDFGRLDL DLEEDSTSSD SSYAPDSDED TATHVKRKVV TKGSQGKSKV  300
IKDVAEVGDT SCAVERVPKT REKVKAIIEN PEVYLDDPTN IHFETGVKNR KYELLVHAQL  360
VKDYCLRFKD YIYYLDPKGK LEAKTAKWKD QRVCIKKWVK ICDRNKLKKQ DRVVCELLRN  420
KDLVYAVKIH IIRGKHLVSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1611053104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152581001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644113.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-123Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A3P6CYY90.0A0A3P6CYY9_BRAOL; Uncharacterized protein (Fragment)
STRINGBra018530.1-P0.0(Brassica rapa)
STRINGBo2g100580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.13e-54B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]