PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00152863001

Common Name

GSBRNA2T00152863001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 213aa MW: 23064 Da PI: 8.0084

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00152863001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.8	8.9e-55	20	113	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ng+dllwa+atlGfedy+eplkvyl++y GSBRNA2T00152863001 20 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGEDLLWAMATLGFEDYLEPLKVYLARY 109 69**************************************************************************************** PP NF-YB 91 rele 94 re + GSBRNA2T00152863001 110 REGD 113 *965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-52	18	127	IPR009072	Histone-fold
SuperFamily	SSF47113	7.3E-40	23	129	IPR009072	Histone-fold
Pfam	PF00808	1.7E-27	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.4E-21	54	72	No hit	No description
PROSITE pattern	PS00685	0	57	73	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.4E-21	73	91	No hit	No description
PRINTS	PR00615	2.4E-21	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MADTPSSPAG DGGESGGGSV REQDRYLPIA NISRIMKKAL PPNGKIGKDA KDTVQECVSE 60 FISFITSEAS DKCQKEKRKT VNGEDLLWAM ATLGFEDYLE PLKVYLARYR EGDNKGSGKS 120 GDGSNRDAAA GGVPNEDMPR DPVLVGCSRR FLFIRYDNSL KEGKKVCPQA LSSLSFVYGF 180 QNLNMNGLTC ASNYTVRAPN NISECFSCYG KK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-46	19	111	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-46	19	111	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2043	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00152863001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353248	1e-132	AK353248.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-P17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633987.1	2e-97	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_013703666.1	2e-97	nuclear transcription factor Y subunit B-1-like isoform X2
Swissprot	Q9SLG0	5e-87	NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A3P6CCF6	1e-142	A0A3P6CCF6_BRAOL; Uncharacterized protein
STRING	Bra005074.1-P	8e-95	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	7e-69	nuclear factor Y, subunit B1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]