PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153126001
Common NameGSBRNA2T00153126001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 259aa    MW: 28596.8 Da    PI: 6.5757
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153126001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-077799326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         +++C+ +a+ G C++Gd+C+ +Hg
  GSBRNA2T00153126001 77 QPICS-YAAAGDCPRGDQCPHIHG 99
                         68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.50774101IPR000571Zinc finger, CCCH-type
SMARTSM003560.002575100IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-47799IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.12E-13133207No hitNo description
Gene3DG3DSA:3.30.40.105.3E-10136202IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.91E-5142202No hitNo description
SMARTSM001842.8E-7143200IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297143201IPR001841Zinc finger, RING-type
PfamPF000973.4E-7143200IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180167176IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTGRILQTIC ALSTKEATAL TEADAGTNMS NLLALLIHLP PHLPPTYLLD LSSSPAWTLA  60
SLDDEVNNTD ATKPEDQPIC SYAAAGDCPR GDQCPHIHGD LCPTCQKHCL HPFRPEEREE  120
HKRSCEKKHK QLEALKLSQD VECCVCLERV LSKPTPAERK FGILTECDHA FCIGCIRNWR  180
SSAPSTGMDV NSTLRACPIC RKLSYFVVPS VIWFSDPDEK KEIMDNYRDK LRSKLIASTS  240
ILEMGTVRLG QVASTSTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153126001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600569.11e-148PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2
SwissprotE0X9N41e-105C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0D3DQX21e-133A0A0D3DQX2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GA111e-133A0A3P6GA11_BRAOL; Uncharacterized protein
STRINGBo8g071350.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-95C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]