PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153547001
Common NameGSBRNA2T00153547001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 348aa    MW: 38121.1 Da    PI: 7.6109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153547001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.7e-16164209555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  GSBRNA2T00153547001 164 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 209
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-18157220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-17164212No hitNo description
Gene3DG3DSA:4.10.280.104.3E-17164217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-13164209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWHN GQLGLHGLCP PRWTKLLASL  60
TLSPPMSSQP ATGVGSCSDG HPMDGGKRAR VAPEWSASRS QRLTIDTYGF TSTSLDDNSS  120
SGGKPFPKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK  180
TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVYMMSRMNM PSMMLPMAMQ QQQQQLQLNL  240
MSSSMGLGLR MGMPGLGLVD LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSTDP  300
RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYHQMQQQ LPPSNQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRD
2168173RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153547001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684278.10.0transcription factor UNE10-like
SwissprotQ8GZ381e-135UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D3B7I90.0A0A0D3B7I9_BRAOL; Uncharacterized protein
STRINGBo3g042120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]