PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153609001
Common NameGSBRNA2T00153609001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 325aa    MW: 37202.3 Da    PI: 10.2684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153609001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016991223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         +C+ Cgk F+    L++H  t H
  GSBRNA2T00153609001 69 RCGECGKGFRYEKCLRNHSETmH 91
                         7*****************88877 PP
2zf-C2H211.60.00083282304123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg++Fs+   L  H+  H
  GSBRNA2T00153609001 282 HRCRLCGRVFSTYQALGGHQTFH 304
                          79*************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.566891IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.73E-66890No hitNo description
PROSITE profilePS5015710.3466896IPR007087Zinc finger, C2H2
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6277304No hitNo description
PfamPF139123.3E-7282304IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18282309IPR007087Zinc finger, C2H2
SMARTSM003550.2282304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDDHQEFEKP IFDLHNRKVR SSRMKKKNRL GESMNHHYEE IFCYYGLRES PKKRTTQKSL  60
RVKKKRLVRC GECGKGFRYE KCLRNHSETM HPLKEKKKKS ESMRRDLLCF LRSGGVQRRK  120
RSKRVSRYKK SLPPLSVSSS SSSSAFGNDG ELLEVAESLI MLSKSGDALF SNLELNERKC  180
EDGFLGNEQK LVGSLSNELK LVGIRTDSNG TSKELLGFLG DKKVMKEDEV GAESFGEEVR  240
LERVSLDDKK AETDTEQKLG GQEAVFEVSN SASKGFQMNN EHRCRLCGRV FSTYQALGGH  300
QTFHRMKNNS EKSKHEMQRR VSRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15165KKRTTQKSLRVKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153609001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624111.10.0PREDICTED: uncharacterized protein LOC106330109
RefseqXP_013681543.10.0uncharacterized protein LOC106386211
TrEMBLA0A3P6AEU10.0A0A3P6AEU1_BRAOL; Uncharacterized protein
STRINGBo3g055350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.18e-26C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]