PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153671001
Common NameGSBRNA2T00153671001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 372aa    MW: 41535.7 Da    PI: 8.0216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153671001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-113460127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H++
  GSBRNA2T00153671001 34 PGEPDCSYYIRTGLCRFGSTCRFNHPR 60
                         5789*********************96 PP
2zf-CCCH37.73.4e-1281105327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ++++tGtCk+G +CkF+H++
  GSBRNA2T00153671001  81 QPECEYYLKTGTCKFGVTCKFHHPR 105
                          799********************96 PP
3zf-CCCH37.54e-12127150427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C +f+rtG+Ck+G++CkF+H++
  GSBRNA2T00153671001 127 VDCAYFLRTGHCKFGATCKFNHPQ 150
                          78********************97 PP
4zf-CCCH331e-10250276127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+ +tG Ck+G  CkF+H++
  GSBRNA2T00153671001 250 PGQPECQFYVKTGDCKFGTVCKFHHPR 276
                          5789*********************96 PP
5zf-CCCH34.14.6e-11297322227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C f++r+G+Ck+G++CkF+H++
  GSBRNA2T00153671001 297 GEPSCVFYSRYGICKFGPSCKFHHPM 322
                          7889********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-53360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6993361IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-83560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-63861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-43960IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-578105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10878106IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-981105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-682107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-484105IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6124152IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901249277IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5249276IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4255277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666295323IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5299322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSSLSPLMIN QEAMWQMNMT SDETMEPGSY PERPGEPDCS YYIRTGLCRF GSTCRFNHPR  60
DRELVIATAR MRGEYPERIG QPECEYYLKT GTCKFGVTCK FHHPRNKAGI AGRVSLNMLG  120
YPLRNEVDCA YFLRTGHCKF GATCKFNHPQ PQPTTNLMVP TSGQQQSYPW SRASFIPTPR  180
WQDTSGFTAL MMPQGVIWNP YTSQLGSVSP SGTGNDHNNY RKLQQNESGS SVPQGGIYAL  240
PSESVFPERP GQPECQFYVK TGDCKFGTVC KFHHPRDRQT PPPDCLLSPI GLPLRPGEPS  300
CVFYSRYGIC KFGPSCKFHH PMGVFTYDNT ASETDEVVET ATGHSRRLSV SETRQAATTS  360
GQDTTIDTTH R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99721e-153flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153671001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625316.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A3P6AF370.0A0A3P6AF37_BRAOL; Uncharacterized protein
STRINGBo3g055860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]