PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153797001
Common NameGSBRNA2T00153797001, LOC106452078
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 854aa    MW: 97096.7 Da    PI: 7.1025
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153797001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.33.7e-50301472118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYah+e+
  GSBRNA2T00153797001  30 LEEaRSRWLRPNEIHAVLSNPKYFTINVKPVNLPTSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGED 119
                          55669************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n+tf rrcywlL++++e+ivlvhy++++
  GSBRNA2T00153797001 120 NTTFVRRCYWLLDKARENIVLVHYRDTQ 147
                          *************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.16226152IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-7829147IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4432145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.0E-4313399IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.54E-14314400IPR014756Immunoglobulin E-set
PfamPF127963.4E-7502580IPR020683Ankyrin repeat-containing domain
CDDcd002049.57E-16508610No hitNo description
SuperFamilySSF484034.82E-17509614IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-17509613IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.963518613IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.728551583IPR002110Ankyrin repeat
SMARTSM002483.4E-6551580IPR002110Ankyrin repeat
PROSITE profilePS500967.144700724IPR000048IQ motif, EF-hand binding site
PfamPF006120.21700716IPR000048IQ motif, EF-hand binding site
SMARTSM0001585715737IPR000048IQ motif, EF-hand binding site
SMARTSM000150.024738760IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.255739763IPR000048IQ motif, EF-hand binding site
PfamPF006120.014740760IPR000048IQ motif, EF-hand binding site
SMARTSM0001513812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224813842IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MDGDGSSGRL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINVKPV  60
NLPTSGRIIL FDRKMLRNFR KDGHNWKKKK DGRTVKEAHE HLKVGDEERI HVYYAHGEDN  120
TTFVRRCYWL LDKARENIVL VHYRDTQEAA TTSGDSNSPS AHSSSNLVAV EDIEFNRDES  180
LYLGINNTPV VKTHETRLHD INTLDWDELL VQSDLDNQSA PIVDDMSYFT EHLQNATKDT  240
AEHLTVADES LDALLNNGPQ SRENFGRWMN SFIGDPNGSL EDPSFEAMVT LDQNPLAPQA  300
TFHPHSDLPQ QVFNITEVSP AWAYSSEKTK IVVTGILHNS YQHLGSSNLF CICGDSCVPA  360
EYVQAGVYRC FIPPHSPGMA NLYLSADGHE PISQCFTFEH RPAPVSAKTV LENDQESKWE  420
EFELQVRLAH LLFTSSNKLN VLSSNISPEN FLDAKKLSNK TSHLLNSWAY LIKSVQGSKV  480
SFDQAKDQIF ELTLKNRIKE WLMEKVLEGR NARDYDSKGL GVIHLCAILG YTWSIQLFSL  540
SGLSLDFRDK QGWTALHWAA YYGREKMVAA LLTAGAKPNL VTDSRKDNLG GCTPADLAQQ  600
NGFDGIAAYL AEKCLVAQFV AMKLAGNISG TLETCKGEMS NQGPLPDDEQ NLKDALAAYR  660
TAAEAAARIQ GAFREKALKT ARSKVIQFDN KEEEAKSIIA AMKIQNAFRK YDTRRKIEAA  720
YRIQCRFQTW KMRREFLNMR RQAIRIQAAF RGLQARKQYR KILWSVGVLE KAIIRWRQKR  780
KLFIGLQVSE AEAEEKAEED FYKASQKQAE ERLERSVVRV QAMFRSKKAQ EDYRRMKLTH  840
EETQLEYEFL HDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233400.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153797001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749550.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A397ZGR50.0A0A397ZGR5_BRACM; Uncharacterized protein
STRINGBra022188.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]