PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154092001

Common Name

GSBRNA2T00154092001, LOC106370418

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 236aa MW: 26800.3 Da PI: 9.3294

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154092001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.5	1.7e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ++GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkat GSBRNA2T00154092001 6 TVGFRFYPTEDELIAFYLRNQLEGRSgDTIHRVIPVLDVFEVEPSHLPNiagdRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKAT 95 78*********************96666778***********656776677888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ GSBRNA2T00154092001 96 GSPGPVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.549	5	162	IPR003441	NAC domain
Pfam	PF02365	7.5E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAKELTVGFR FYPTEDELIA FYLRNQLEGR SGDTIHRVIP VLDVFEVEPS HLPNIAGDRC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE TFNVSTVHKL RHEFSLCRVY ITSGSSRAFD RRPMGFFQAE 180 RMLTRDVAVG ERSVRVESSP EASMSEGGHG YLSVNGEMVD GLTKPIWEWE QLSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	5	167	20	173	NAC domain-containing protein 19
3swm_B	1e-31	5	167	20	173	NAC domain-containing protein 19
3swm_C	1e-31	5	167	20	173	NAC domain-containing protein 19
3swm_D	1e-31	5	167	20	173	NAC domain-containing protein 19
3swp_A	1e-31	5	167	20	173	NAC domain-containing protein 19
3swp_B	1e-31	5	167	20	173	NAC domain-containing protein 19
3swp_C	1e-31	5	167	20	173	NAC domain-containing protein 19
3swp_D	1e-31	5	167	20	173	NAC domain-containing protein 19
4dul_A	1e-31	5	167	17	170	NAC domain-containing protein 19
4dul_B	1e-31	5	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154092001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013665880.1	1e-176	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-144	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M4CDX7	1e-174	M4CDX7_BRARP; Uncharacterized protein
STRING	Bra002408.1-P	1e-174	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-135	NAC domain containing protein 90

Link Out ? help Back to Top
Entrez Gene	106370418

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]