PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154410001
Common NameGSBRNA2T00154410001, LOC106387789
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 307aa    MW: 33924.3 Da    PI: 6.2595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154410001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183383256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  GSBRNA2T00154410001 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                         69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-273288No hitNo description
SMARTSM003801.4E-333396IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-203389IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-283389IPR001471AP2/ERF domain
PROSITE profilePS5103220.313390IPR001471AP2/ERF domain
PfamPF008478.5E-143483IPR001471AP2/ERF domain
PRINTSPR003672.5E-93445IPR001471AP2/ERF domain
PRINTSPR003672.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPQNA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQKQC VNRNLSFSGH GSGSWGYKFD  120
TVRGLELGLG TSNEARGSWS GGFSFLQEDD YHNSNRYVSS SGSNLSWLLP KRSSSQDQES  180
VNAASGSGGQ TFSTKLKPQN LMMTPSDYGS SNGVWSRFLA GQQENKIEYD VSSSCGSSDN  240
KESVSAPSGE SGDAGEGLHR PEVEEETGYL EMENLLEIDD LGLLIGKNGD FKNWCCDEFQ  300
HAWNWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87735e-58seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154410001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120973.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_013683165.10.0dehydration-responsive element-binding protein 2G
SwissprotP618271e-160DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A3P6DIT50.0A0A3P6DIT5_BRACM; Uncharacterized protein
TrEMBLM4CD780.0M4CD78_BRARP; Uncharacterized protein
STRINGBra002159.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-149ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]