PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154440001
Common NameGSBRNA2T00154440001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 260aa    MW: 28081.2 Da    PI: 6.228
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154440001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.4e-16191227135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+++  Tp++Rrgp+g++tLCnaCGl++ ++g+
  GSBRNA2T00154440001 191 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWVSRGT 227
                          ********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.8E-135994IPR010399Tify domain
PROSITE profilePS5132014.9575994IPR010399Tify domain
PfamPF062002.3E-136193IPR010399Tify domain
PROSITE profilePS5101711.747123165IPR010402CCT domain
PfamPF062032.3E-14123165IPR010402CCT domain
PROSITE profilePS5011410.831185241IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-17185238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-12186236No hitNo description
Gene3DG3DSA:3.30.50.106.8E-15189232IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.13E-17190239No hitNo description
PROSITE patternPS003440191218IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13191227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MFPQLEINPY QIGSTLGEDH VSASAAHIPY IHEIANHPDS IYAASGLIPD GSQLLDSPAP  60
EGANQLTISY RGQVYVFDAV GPEKVDAVLS LLGGSTAPQE MEIAQQNHMP VVEHQSRCSH  120
PQRAQSLDRF RKKRSARCFA NQVRYGVRQE VALRMPRNKG QFSSAKTADG AYNSGTDQDN  180
AHDDGRPEIS CTHCGVSSTC TPMMRRGPSG PRTLCNACGL FWVSRGTLRD LSKKTEDNQV  240
AMIEPGELGG DADANNSDL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.102041e-140flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154440001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737991.10.0GATA transcription factor 25-like
SwissprotQ9LRH61e-132GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D3DFV50.0A0A0D3DFV5_BRAOL; Uncharacterized protein
STRINGBo7g109540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-134GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]