PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154493001

Common Name

GSBRNA2T00154493001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 371aa MW: 40888.1 Da PI: 5.7791

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154493001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	100.4	1.6e-31	150	250	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 k+fqrl+se+Dei++LqG++df++++g +ps+++daf+++vk i+f++sk q+v+K++r KkKf + vk+ k++++++ +k+ +q GSBRNA2T00154493001 150 KMFQRLFSETDEIAMLQGFLDFTSTKG-DPSENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNslkrGKTEDQITYAKDLEQ 238 58***********************.9*********************************9999887778999******* PP DUF573 87 kifelskkiWgs 98 k+fels+kiWgs GSBRNA2T00154493001 239 KTFELSRKIWGS 250 ********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-25	152	249	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAPKQTDKIE NPPVASSSEE EEEEESGSSG EESNSSDDEA GDVQSKLTQK KPVAPPPPAK 60 KPESDSEEES ESDSDSEPAT KTKPLNAVVT KPIPATLPES STPKRSLKQA DNEPKKKAKT 120 STTTEQAKKK PSTSAADEEV KKISGEEAKK MFQRLFSETD EIAMLQGFLD FTSTKGDPSE 180 NMDAFCDYVK TLIDFNASKA QIVTKLQRCK KKFVNIVKNS LKRGKTEDQI TYAKDLEQKT 240 FELSRKIWGS DGVLPAKPRK KSKEVELLST PKKEAEVETQ KKVSVVDTHL SSSREMALFF 300 KAENVSVLGL DESTVSAVWD MVGDGPKKRE MEEKLKKLKA KQMELCLQRT SLVDYTAKMI 360 FKNNASSSSS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAPKQTDKIE NPPVASSSEE EEEEESGSSG EESNSSDDEA GDVQSKLTQK KPVAPPPPAK  60
KPESDSEEES ESDSDSEPAT KTKPLNAVVT KPIPATLPES STPKRSLKQA DNEPKKKAKT  120
STTTEQAKKK PSTSAADEEV KKISGEEAKK MFQRLFSETD EIAMLQGFLD FTSTKGDPSE  180
NMDAFCDYVK TLIDFNASKA QIVTKLQRCK KKFVNIVKNS LKRGKTEDQI TYAKDLEQKT  240
FELSRKIWGS DGVLPAKPRK KSKEVELLST PKKEAEVETQ KKVSVVDTHL SSSREMALFF  300
KAENVSVLGL DESTVSAVWD MVGDGPKKRE MEEKLKKLKA KQMELCLQRT SLVDYTAKMI  360
FKNNASSSSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	PKKKAKT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13659	0.0	flower\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269\|PubMed:25877331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154493001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241036	0.0	AC241036.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599156.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	Q9SB42	1e-108	STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBL	A0A0D3DG06	0.0	A0A0D3DG06_BRAOL; Uncharacterized protein
STRING	Bo7g110050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9272	17	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	9e-97	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]