PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154637001
Common NameGSBRNA2T00154637001, LOC106409349
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 525aa    MW: 57976.6 Da    PI: 7.5755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154637001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31199256260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C++kk  ers+ d+k+++i+Y+g+H+h+k
  GSBRNA2T00154637001 199 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEAKKLFERSH-DGKITDIVYKGTHDHPK 256
                          8****************************************.***************85 PP
2WRKY107.37.8e-34349407159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00154637001 349 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 407
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.824193257IPR003657WRKY domain
SuperFamilySSF1182909.81E-25196257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-27197257IPR003657WRKY domain
SMARTSM007744.6E-34198256IPR003657WRKY domain
PfamPF031061.4E-24199255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37334409IPR003657WRKY domain
SuperFamilySSF1182901.57E-29341409IPR003657WRKY domain
PROSITE profilePS5081138.629344409IPR003657WRKY domain
SMARTSM007743.1E-39349408IPR003657WRKY domain
PfamPF031064.1E-26350407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNPQADNERK EFQVGCTPTA DSTARHNSGG GGGARYKLMS PAKLPISRCN DITIPPGMSP  60
TSFLESPVFI SNIKPEPSPT TGSLVKPRPV HVNSSSYTGR TFHQNTFTEY KSTEFEFRPP  120
ASNMVYAELD KHRSEPPVQG HGSSSHSPSS ISEAAAASST DLSRAAPPVQ TPPTGSDQDE  180
TVQTSQNDSR GSTPPVLADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE AKKLFERSHD  240
GKITDIVYKG THDHPKPQPG RRNSAAQEER LEKGVYNLSQ AIEQTGNNNP EVPLTTEDGG  300
EVKDDLEEEE DPFTKRRRLD GSMEITTPLV KPIREPRVVV QTLSEVDILD DGYRWRKYGQ  360
KVVRGNPNPR SYYKCTAPGC PVRKHVERAS HDPKAVITTY EGKHNHDVPT SKSTNHHDIQ  420
PRFRPDETTD TISLNLGVGI SSGGPDNTSN ERNQQLINQT HPNGVGFRFV HAAPVSYYHV  480
SLNSGIHQYG SRETQNETRN GDVSSLNHSS YQYSHNIGRV QSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37197409877Probable WRKY transcription factor 4
2lex_A1e-37197409877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314318KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154637001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705448.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0A7RCJ90.0A0A0A7RCJ9_BRAOC; WRKY81 protein
STRINGBo7g111000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]