PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155125001
Common NameGSBRNA2T00155125001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 214aa    MW: 23333.6 Da    PI: 4.1569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155125001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-181463356
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr++  +g+WvAeIr p     +  +r +lg+f + +eAa a+++a+k+++ge
  GSBRNA2T00155125001 14 YRGVRQRT-WGKWVAEIRQP-----CrgARLWLGTFPSSYEAALAYDEAAKAMYGE 63
                         9****999.**********8.....337*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-341376IPR001471AP2/ERF domain
PROSITE profilePS5103220.9821370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-281371IPR001471AP2/ERF domain
CDDcd000181.81E-311371No hitNo description
PfamPF008479.8E-141463IPR001471AP2/ERF domain
PRINTSPR003674.2E-91425IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-191471IPR016177DNA-binding domain
PRINTSPR003674.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKGKGGPENG IWNYRGVRQR TWGKWVAEIR QPCRGARLWL GTFPSSYEAA LAYDEAAKAM  60
YGESARLNLP DISNVSSSAA AGSVTTLSNE SEVCALEDTN VKEEDGSDEY GFLKSSQCVK  120
EEMSVLDSAD TFGNGNEHEP WDFCVHEMFD VDEVMGLLDE INVSGQETTL SQDASLLGSL  180
NHTETAHPGV DYGYPIVQPS ERNNTSCVGL DRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-181370260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155125001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634189.11e-159PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ8LFR22e-82DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0D3C5D91e-158A0A0D3C5D9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CZ771e-157A0A3P6CZ77_BRAOL; Uncharacterized protein
STRINGBo4g190040.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-70ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]