PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155366001
Common NameGSBRNA2T00155366001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 180aa    MW: 20228.5 Da    PI: 9.997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155366001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+Fs+   L  H  +H
  GSBRNA2T00155366001 48 FECKTCNKRFSSFQALGGHRASH 70
                         89**********99999998887 PP
2zf-C2H218.65.1e-0694116123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++CgksF +   L  H+r+H
  GSBRNA2T00155366001  94 HECTICGKSFGTGQALGGHMRRH 116
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-947116No hitNo description
PfamPF139121.5E-124772IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
SMARTSM003550.0934870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-680117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-1393118IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.82494121IPR007087Zinc finger, C2H2
SMARTSM003550.003994116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRERSEFEE SIKNLDIAKC LMILSQTSSM VKQIGVNQYA ESNSSNRFEC KTCNKRFSSF  60
QALGGHRASH KKPKLTVDQK VVKQYLTKEG TQAHECTICG KSFGTGQALG GHMRRHRSSM  120
MVEPSELISP VIHNMPVLKR CSSSKRVLSL DLNLTPLEND LEILFGKTFF PNIDMKFVV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155366001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635243.11e-130PREDICTED: zinc finger protein ZAT11-like
RefseqXP_022557798.11e-129zinc finger protein ZAT9-like
SwissprotQ9SLD45e-98ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3P6D4391e-130A0A3P6D439_BRAOL; Uncharacterized protein
STRINGBo4g186920.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]