PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155517001
Common NameGSBRNA2T00155517001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 261aa    MW: 29273.9 Da    PI: 7.3119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155517001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C ksF +   L  H+r+H
  GSBRNA2T00155517001  4 YKCKFCFKSFVNGRALGGHMRSH 26
                         9*********************9 PP
2zf-C2H216.32.8e-05152174123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgk+F++   L  H  +H
  GSBRNA2T00155517001 152 YTCETCGKVFKSYQALGGHRASH 174
                          9************9999998887 PP
3zf-C2H210.80.0015197219123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F +   L  H r+H
  GSBRNA2T00155517001 197 HECPICLRVFASGQALGGHKRSH 219
                          79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-10326No hitNo description
Gene3DG3DSA:3.30.160.609.9E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-10147174No hitNo description
SMARTSM003550.011152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24152179IPR007087Zinc finger, C2H2
PfamPF139123.7E-11152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM003550.23197219IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-12197219IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058197219IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSIQEEEE RPSQLGDESK SDVSSSEEGQ  60
EQKISGSREE KHPTMDDDGS ETESSRDIKM KTSQLGYKNE PEAEPPQSSA SDTTTEEDLA  120
LCLMMLSRDK WRKNKVSDKM INRATTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVT  180
NKTDYDIVVV AAEKRIHECP ICLRVFASGQ ALGGHKRSHG LGNLSVNPHH QVRMESVKEK  240
MIDLNLPAPT EEEEVSMVFQ *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155517001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893191e-134AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712128.10.0zinc finger protein ZAT9-like
SwissprotQ9M2021e-114ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A0D3DUM80.0A0A0D3DUM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GD650.0A0A3P6GD65_BRAOL; Uncharacterized protein
STRINGBo8g095300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]