PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155753001
Common NameGSBRNA2T00155753001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 577aa    MW: 65113.3 Da    PI: 6.7222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-131162247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                         + W+t+E++ll++av+++G ++W+++a+++         +t+ +c+++++++
  GSBRNA2T00155753001 11 QTWSTWEELLLACAVHRHGIDSWDSVAAEIHkqnsssRALTASDCRHKYHDL 62
                         78***********************************99**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.47563IPR017877Myb-like domain
SuperFamilySSF466895.04E-6865IPR009057Homeodomain-like
SMARTSM007174.2E-6965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-5962IPR009057Homeodomain-like
PfamPF002494.5E-121162IPR001005SANT/Myb domain
CDDcd001671.90E-51262No hitNo description
SMARTSM002972.3E-10244354IPR001487Bromodomain
CDDcd043691.69E-14251349No hitNo description
SuperFamilySSF473705.49E-15254354IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-13255373IPR001487Bromodomain
PfamPF004391.4E-8258338IPR001487Bromodomain
PROSITE profilePS5001411.215263335IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAKPENNENH QTWSTWEELL LACAVHRHGI DSWDSVAAEI HKQNSSSRAL TASDCRHKYH  60
DLERRFSPGG DTVSEISGWL EELRKLRVDE LRREVERYDL SISSLQMKVK RLEDEREKSL  120
KEEAEKVTES PDLVKITETV NNSDVPVIEP NREIDESIEE KPNRIGGDET DEKPVREDSG  180
RGSCESVAKD SERGDSVREG KDSPELKLEE EVKETSDVQS SASLPRKEKP VGHDQPDNED  240
QSLAVNKTLV KSRPLIEFIE MLCSHPIGSH FSRRLESQET PEEYERIIRQ HIDFDLIRTR  300
VEEGYYESSK TKFHRDLLVL INNAKVFYGE RSPDSNSATQ LHELIKKQMT TLNTSNQTSP  360
TKDEPLVTSK EEELTLLSLK TEVSVSVKAC RKRSSLAVRS SEPFKKKTNI VPTTDENEKK  420
QVSETEEEDE TTTDKDEEPI VPKKTPRGRT TTTSSSAKKI GTRNVVKTSL DDDQKKSDQE  480
KKGKTTANAV SKKQSAASFL KRMKGAETVL ETVKDDSSSG KKGAEQRRSN TKHEKAVAGQ  540
KRTTPAKKNT SAASKREASE KEEGSSTRPK KRTRKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155753001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661236.10.0uncharacterized protein BNAC08G28910D isoform X2
TrEMBLA0A0D3DU310.0A0A0D3DU31_BRAOL; Uncharacterized protein
STRINGBo8g092340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-169DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]