PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00155766001

Common Name

GSBRNA2T00155766001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 362aa MW: 39258.9 Da PI: 6.1365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00155766001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	194	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq GSBRNA2T00155766001 194 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 241 8***********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	188	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-9	188	245	No hit	No description
PROSITE profile	PS50888	14.684	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-15	190	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	194	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	196	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDLTGAFGAR SAAVGPCREP PGLESLHIGG GDGGFTALLE LPPTQAVELL HFTDPSLSSS 60 SQAAAAAVAG IGLDVSPPPP LHAYGALTFP SNEALMERAA RFSVMANEQQ QQQNGNVSGE 120 TTTTSSVPSN SDRVKTEPGE TDSSQRLENN RCGKRKELDK KVKGSTKKKS KSSEENEKLP 180 YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL 240 QRQVEMLSMR LAAVNPRIDF NFDTLLASEN GSLMDGSFNG TAMQLAWPHQ VTETEQSFHH 300 RQLQQLPLPP QQWPYDGLNQ PAWGREEDQD QGNGHSSLMA VSENLMVGSA SLHPNQVKME 360 L*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDLTGAFGAR SAAVGPCREP PGLESLHIGG GDGGFTALLE LPPTQAVELL HFTDPSLSSS  60
SQAAAAAVAG IGLDVSPPPP LHAYGALTFP SNEALMERAA RFSVMANEQQ QQQNGNVSGE  120
TTTTSSVPSN SDRVKTEPGE TDSSQRLENN RCGKRKELDK KVKGSTKKKS KSSEENEKLP  180
YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL  240
QRQVEMLSMR LAAVNPRIDF NFDTLLASEN GSLMDGSFNG TAMQLAWPHQ VTETEQSFHH  300
RQLQQLPLPP QQWPYDGLNQ PAWGREEDQD QGNGHSSLMA VSENLMVGSA SLHPNQVKME  360
L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28045	1e-171	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00155766001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352728	0.0	AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013672289.1	0.0	transcription factor bHLH60-like
Refseq	XP_013672384.1	0.0	transcription factor bHLH60-like
Swissprot	Q3EAI1	1e-177	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A3P6GVN2	0.0	A0A3P6GVN2_BRAOL; Uncharacterized protein
STRING	Bo8g092230.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-172	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]