PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155943001
Common NameGSBRNA2T00155943001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 360aa    MW: 41975.2 Da    PI: 5.1208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155943001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.52.3e-141912931113
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp G++F+Ptd e+   +Lk+k+ g+++e+  + +e   di+++ P+dLp   + ee++wy+++ ++k    g++  r    + W    +
  GSBRNA2T00155943001 191 LPEGLHFRPTDLEMA-IFLKQKALGQPIEACII-PEErhDIFSIPPRDLPG--YPEETHWYYYCWKSK----GQQDPR----SLWTRFRE 268
                          699**********99.9************9655.44437***********4..34789*******977....556677....58****** PP

                  NAM  89 dkevlskkgelvglkktLvfykgra 113
                          d++v++++++ v +k+ +++ + ++
  GSBRNA2T00155943001 269 DTAVFDEEENCVAIKRRFTLVEREE 293
                          ******99999******99995333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011913.0E-545114IPR005491ENT domain
PROSITE profilePS5113810.31945131IPR005491ENT domain
PfamPF037355.3E-1046101IPR005491ENT domain
SuperFamilySSF1586392.09E-646105IPR005491ENT domain
SMARTSM011910.98138195IPR005491ENT domain
PfamPF037357.6E-5141175IPR005491ENT domain
SuperFamilySSF1019416.41E-18189335IPR003441NAC domain
PROSITE profilePS5100518.282191335IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADKNDLDPN PPATEDGTIR FPVKKRSLPE RSLTGFDRAH EPEFKKQKLE QLQRKAYHSV  60
LLASKSESSG TSHKSHIIQK LMKEWNIDQE THISVAHKID HSEKNASWMI PNSLPNPESL  120
VGKRVHARSP DDDSPTNKKI KLHKQAYDLV LHAFNAESPA LSHSRTLIMQ HLLDECKAHI  180
NKIVEPRSRL LPEGLHFRPT DLEMAIFLKQ KALGQPIEAC IIPEERHDIF SIPPRDLPGY  240
PEETHWYYYC WKSKGQQDPR SLWTRFREDT AVFDEEENCV AIKRRFTLVE REEECNDVFL  300
PDEEEPPVEE WFIKEISLPP SVADSEFVLC HVVLKKREKK KEEEEYYDEE EEEEEEEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155943001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894561e-176AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564598.10.0uncharacterized protein LOC106363510 isoform X1
TrEMBLA0A3P6GLJ10.0A0A3P6GLJ1_BRAOL; Uncharacterized protein (Fragment)
STRINGBo8g090950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-46NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]