PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156062001
Common NameGSBRNA2T00156062001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 177aa    MW: 20460.9 Da    PI: 10.6792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156062001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.8e-051946330
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                         +  n rE+ RR r+++ f++L +++ + 
  GSBRNA2T00156062001 19 EQRNLREKERRMRMKHLFFTLSSHVSPT 46
                         5679********************9774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-101683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.6611665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-61879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0072271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRRQRGRELG EGSSMSWKEQ RNLREKERRM RMKHLFFTLS SHVSPTHRLP VPQLIDHSAS  60
YMIQLKEKVN KLREKKKTLL GEVGNHSEGS SFNLPKLSIC SRGSIIKMNL IMDLNMKRVM  120
LHELVSVFEE EGAQVMSANL QNLNDRITYT VTAQAIICRI GIDPSRIEER LRDIIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156062001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676345.11e-127transcription factor bHLH168
SwissprotF4I4E11e-91BH167_ARATH; Transcription factor bHLH167
SwissprotQ9XIJ19e-92BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A3P5YCK21e-126A0A3P5YCK2_BRACM; Uncharacterized protein
STRINGBo5g012060.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-86bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]