PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156370001
Common NameGSBRNA2T00156370001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27521.6 Da    PI: 6.7805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.2e-132470549
                         SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
               SRF-TF  5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                         n+++ + +f   R ++ilKKA ELS+LCd +++vi +  +g+l  +y
  GSBRNA2T00156370001 24 NQTRFKKSFlLLREKTILKKALELSILCDNDICVIHYDREGNLvNTY 70
                         4444444431349************************9999872456 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00421172IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-1422107IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4613673IPR002100Transcription factor, MADS-box
PfamPF003191.5E-73666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNSLSSSASS STRMKNNNKL SVRNQTRFKK SFLLLREKTI LKKALELSIL CDNDICVIHY  60
DREGNLVNTY PEDQCQVKDI LERYNNLSDT EKIKKNTNLS QFYNKKLVDE KRRSLTDAEE  120
RKRVRDLLYS QSTCLDVMSE QNHNVPASSS GFVFPNELSD PRMNFTPHDL DQQQSFTSLL  180
MSGDHVSANT DQYLLSPASC ATDSSNHESK FSVFVFNHET ATFTQLPNSA SSSFDQGLIG  240
TY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156370001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148218.11e-167PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLM4DQE81e-165M4DQE8_BRARP; Uncharacterized protein
STRINGBra018741.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.15e-39AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]