PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156464001
Common NameGSBRNA2T00156464001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 264aa    MW: 29790 Da    PI: 5.8414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156464001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-1232701350
                         HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
               SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                         +  R+++ilKKA ELS+LC+ e++vi +   g+l ++++
  GSBRNA2T00156464001 32 LLMRQETILKKAGELSTLCGNEICVIHYDRVGNLvRTWP 70
                         567*************************99987636776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-41071IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5311265IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-92881IPR002100Transcription factor, MADS-box
PfamPF003191.8E-73265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSSSSTSSS RNKKVKLSVR KQTLFKKSSI NLLMRQETIL KKAGELSTLC GNEICVIHYD  60
RVGNLVRTWP EDESQVQNMH DEKKRSPIEF SQKVEDLEGS LVYKLQLLQD MMLREDHHAE  120
PDQSITNLLR TGPTSTEQDL SRGDVYNSTA TGSLNHQSKY SIFMFNHENT TLSQLPHSSL  180
EQSLIPSYYN NINDSRTLLG AHGFNDNNNL STTQGFFNFG YDNNALPEEQ VNFGYYNSLL  240
GTQGFGGYDI NLNYTQGFNN LCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156464001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728700.0AC172870.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709481.11e-168agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YBQ70.0A0A3P5YBQ7_BRACM; Uncharacterized protein
TrEMBLM4EGV50.0M4EGV5_BRARP; Uncharacterized protein
STRINGBra028020.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2153425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.17e-33AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]