PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156465001
Common NameGSBRNA2T00156465001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 286aa    MW: 32593.2 Da    PI: 7.6055
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156465001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.8e-1229691150
                         HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
               SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                         +++  R+++il KA ELS+LCd  ++vi +   g+l ++++
  GSBRNA2T00156465001 29 TSLFERQETILRKAGELSTLCDSLICVIHYDRLGNLvKTWP 69
                         7999**************************99887537776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.5782964IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-1031105IPR002100Transcription factor, MADS-box
PfamPF003191.1E-53364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDSSSSSRNN KKVNKFSVRK PTLFKKPFTS LFERQETILR KAGELSTLCD SLICVIHYDR  60
LGNLVKTWPE DESQVQGVAE RYSKLTHEEK QKKSTNLSKF CNKKMHDEKK RFSIKFSQKV  120
QELEGSLVDK LQLLQDILLR EDQSIMSEQN HNFPNYSSVP DHQQQSVSAT STEQDMSRGD  180
VYNSAAATDQ LLNHQSKYSI FLFNHENASF TQLPHSVSSS LQQTYYNNLS DNRALLGGQG  240
FNFGFGNNNV TTALPEEQVN FGYYNNSLNN TQGFNFGYDF NNLCI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156465001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547727.10.0agamous-like MADS-box protein AGL53
RefseqXP_022562375.10.0agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YEN40.0A0A3P5YEN4_BRACM; Uncharacterized protein
TrEMBLM4EGV40.0M4EGV4_BRARP; Uncharacterized protein
STRINGBra028019.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2153425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.17e-43AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]