PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156629001
Common NameGSBRNA2T00156629001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 301aa    MW: 33739.2 Da    PI: 10.3535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156629001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-0982105125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          +kt+lC+ f++ GtC+y  +C+FaH
  GSBRNA2T00156629001  82 FKTKLCCKFRA-GTCPYVTNCNFAH 105
                          69*********.************* PP
2zf-CCCH437.4e-14174199126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  GSBRNA2T00156629001 174 WKTRICNKWEITGYCPFGAKCHFAHG 199
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1379114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-879112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67181108IPR000571Zinc finger, CCCH-type
SMARTSM003560.003981107IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-782105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-17169203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-10170204IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178173201IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11174199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSHRRDSSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRVWAVNPD GDNGPPNKKT  60
RGSPSSASAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL RRPPPNWQEI  120
VLELLRRLSR GRSIRSRLWC RRRMRVGEFR PWRLRWRWFW WCGSGVDILK PSNWKTRICN  180
KWEITGYCPF GAKCHFAHGA AELHRFGGGL VEGEGKDGGV SSNPDIKQTG PNPKGHSDTT  240
TPLLSPGVVP HNADAGYHSG VALQRASSAV TQKPGIRTHQ KWKGPAKISR IYGDWIDDIE  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145RLWCRRRMRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156629001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648063.11e-163zinc finger CCCH domain-containing protein 12-like
RefseqXP_013725764.11e-163zinc finger CCCH domain-containing protein 12-like
SwissprotQ5PP651e-89C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A078IQ761e-162A0A078IQ76_BRANA; BnaA05g35950D protein
STRINGBra010155.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.17e-81C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]