PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156648001
Common NameGSBRNA2T00156648001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 223aa    MW: 25734.3 Da    PI: 8.8205
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156648001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-071722042254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp+++++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00156648001 172 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 204
                          59*****************************87 PP
2ELK23.21.6e-08125146122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  GSBRNA2T00156648001 125 ELKLELKQGFKSRIEDVREEIM 146
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.8E-122766IPR005541KNOX2
PfamPF037912.0E-122765IPR005541KNOX2
PROSITE profilePS512139.202125145IPR005539ELK domain
PROSITE profilePS5007111.823145208IPR001356Homeobox domain
SMARTSM003896.3E-11147212IPR001356Homeobox domain
SuperFamilySSF466891.5E-16147211IPR009057Homeodomain-like
CDDcd000861.61E-11148209No hitNo description
Gene3DG3DSA:1.10.10.603.0E-25152210IPR009057Homeodomain-like
PfamPF059202.1E-18165204IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVFTKIKNIL MYIYVGTNNN KNWIQVQYVM VLCSFKEQLQ QHVRVHAVEA VMACREIENN  60
LHSLTGATLG EGSGATMSED EEDLHMDFSS DTSGVGFSGG HDMTGFGPLL PTESERSLME  120
RVRQELKLEL KQGFKSRIED VREEIMRKRR AGKLPGDTTT VLKNWWQQHC KWPYPTEDDK  180
AKLVEETGLQ LKQINNWFIN QRKRNWHNNS HSLTSLKSKR KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13148204864Homeobox protein PKNOX1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In roots, stems and cotyledons of one-week old seedlings. In mature plants, in young leaves from first level below flowers as well as in flower buds and open flowers.
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156648001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614592.11e-147PREDICTED: homeobox protein HD1-like isoform X1
SwissprotP466061e-143HD1_BRANA; Homeobox protein HD1
TrEMBLA0A3P6C7491e-143A0A3P6C749_BRAOL; Uncharacterized protein
STRINGBra036636.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-146KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]